Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D08
         (203 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   100   2e-22
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    27   2.4  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    25   7.4  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    25   9.7  
AC006676-4|AAK71380.1|  288|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  100 bits (239), Expect = 2e-22
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +3

Query: 39  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 203
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKI 55


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 36  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 164
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYG 275


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 83  SSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 172
           S SR+   R+   +SP   E   +P RWC+
Sbjct: 579 SRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 91  ASSDGPTRNSKKPTWVRDGRR 153
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 91  ASSDGPTRNSKKPTWVRDGRR 153
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 82  IIVASSDGPTRNSKKPTW 135
           II   +DGPT    KP W
Sbjct: 63  IIAPGADGPTETKAKPKW 80


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 26  SRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGE 154
           + Y+NG TSG + G++  E   +    ++  ++S +  E EGE
Sbjct: 627 NHYKNG-TSGTTAGSEILEKKKKKKDKKKKNKRSDNNSESEGE 668


>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 21  RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKK 125
           R R+I+   P+ +      +NH   ++WAD  F++
Sbjct: 80  RTRSIIKFGPKTLLGRFVRMNHEHRRQWADWYFEE 114


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 3   NSARGDRVRAIVMGKPRGIRTARKHVNHRREQRWADKE 116
           N AR +R+R     +    + ARKH+  R EQ   +KE
Sbjct: 482 NEAREERIRR---NERDSWKDARKHIEQRYEQLLNEKE 516


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 3   NSARGDRVRAIVMGKPRGIRTARKHVNHRREQRWADKE 116
           N AR +R+R     +    + ARKH+  R EQ   +KE
Sbjct: 482 NEAREERIRR---NERDSWKDARKHIEQRYEQLLNEKE 516


>Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  LRAVRIPRGLPITIARTRSPRAEF 2
           ++ VRIPR  PI I   R P   F
Sbjct: 214 IQGVRIPRSRPIDIVPNREPLFPF 237


>Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  LRAVRIPRGLPITIARTRSPRAEF 2
           ++ VRIPR  PI I   R P   F
Sbjct: 214 IQGVRIPRSRPIDIVPNREPLFPF 237


>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 69  RKHVNHRREQRWADKEFKKAHMGTRW--KANPFGG 167
           RKH NH+  Q    KE K A    R+  K + FGG
Sbjct: 17  RKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGG 51


>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 29  RYRNG*TSGYSHGAQA-RESSSRAAMGRQGIQKSPHGYEMEGEPLR 163
           R+  G    YS+     R+S S+    R GI    H Y  E  PLR
Sbjct: 6   RFSPGANPDYSNRTMNYRDSRSQQITPRGGIDSRVHAYGREYPPLR 51


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 69  RKHVNHRREQRWADKEFKKAHMGTRW--KANPFGG 167
           RKH NH+  Q    KE K A    R+  K + FGG
Sbjct: 17  RKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGG 51


>AC006676-4|AAK71380.1|  288|Caenorhabditis elegans Hypothetical
           protein M04F3.1 protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  DRVRAIVMGKPRGIRTARKHVNHRREQ 98
           +R+ A++M  P G R   +HV+   EQ
Sbjct: 228 ERITAVLMAVPEGSRDEGRHVSWIAEQ 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,388,867
Number of Sequences: 27780
Number of extensions: 97923
Number of successful extensions: 307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)