Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D08
         (203 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   2.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   4.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   5.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   5.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   7.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   7.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 68  AQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GH 187
           A + E+S+ A    + + K P  + +     RW  SC G+
Sbjct: 34  ATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIGY 73


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 81  SRACAPCEYPEV--YP 40
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231



 Score = 19.0 bits (37), Expect = 5.9
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -3

Query: 63  CEYPEVY 43
           C+YP++Y
Sbjct: 228 CDYPDIY 234


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 81  SRACAPCEYPEV--YP 40
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231



 Score = 19.0 bits (37), Expect = 5.9
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -3

Query: 63  CEYPEVY 43
           C+YP++Y
Sbjct: 228 CDYPDIY 234


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 81  SRACAPCEYPEV--YP 40
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231



 Score = 19.0 bits (37), Expect = 5.9
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -3

Query: 63  CEYPEVY 43
           C+YP++Y
Sbjct: 228 CDYPDIY 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 130 TWVRDGRRTP 159
           TW +DGR+ P
Sbjct: 366 TWYKDGRQLP 375


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 130 TWVRDGRRTP 159
           TW +DGR+ P
Sbjct: 366 TWYKDGRQLP 375


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 147 SISYPCGLF*IPCRPIAARD 88
           ++SY  G + IP   I++RD
Sbjct: 113 AVSYTSGFYHIPVIGISSRD 132


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 131 VGFFEFLVGPSL 96
           +G  EFL+ PSL
Sbjct: 98  IGMGEFLIDPSL 109


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 99  AARDDDSRACAPCEYPEV-YPLR*R 28
           A R+ +  +C P  YP++ Y +R R
Sbjct: 186 ARRNVEYYSCCPEPYPDITYEIRLR 210


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 96  QRWADKEFKKAHMGT 140
           +RW D+ ++  H G+
Sbjct: 311 ERWRDRIYEAIHTGS 325


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 158 GVRLPSRTHVGFFEFL 111
           G  L   THV FF  L
Sbjct: 383 GAELMQETHVCFFSLL 398


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 8   GTRRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQ 112
           G   +CS  ++  +SG S    +  S S    GR+
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50



 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/20 (25%), Positives = 11/20 (55%)
 Frame = +1

Query: 112  RNSKKPTWVRDGRRTPSVVH 171
            +  K+P W+     TP +++
Sbjct: 992  KRRKEPPWLEGVHVTPELIY 1011


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 8   GTRRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQ 112
           G   +CS  ++  +SG S    +  S S    GR+
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 177 HEMHHRRGSPSISYPC 130
           +E+ H R  P+  Y C
Sbjct: 394 NELRHSRPVPAKKYDC 409


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 82  FTCLRAVRIPRGLPI 38
           +T    +R+P G PI
Sbjct: 457 YTLKHKIRVPPGTPI 471


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 VRDGRRTPSVVHLMLRASSSK 198
           VRDG RTP      + A  SK
Sbjct: 408 VRDGCRTPFQWDNSINAGFSK 428


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 24  HDRLVPNS 1
           HDR +PNS
Sbjct: 806 HDRYLPNS 813


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 177 HEMHHRRGSPSISYPC 130
           +E+ H R  P+  Y C
Sbjct: 394 NELRHSRPVPAKKYDC 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,646
Number of Sequences: 438
Number of extensions: 1007
Number of successful extensions: 27
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)