Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D07
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 43 1e-05
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 40 1e-04
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 28 0.33
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 4.1
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 5.4
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 24 5.4
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 24 7.1
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 24 7.1
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 23 9.4
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 23 9.4
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 42.7 bits (96), Expect = 1e-05
Identities = 22/38 (57%), Positives = 25/38 (65%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEE 254
RE+ V AKLAEQAERY+ M MK V T EL+ EE
Sbjct: 6 REDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEE 43
Score = 35.1 bits (77), Expect = 0.003
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR++SSIE
Sbjct: 53 NVIGARRASWRIVSSIE 69
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 39.5 bits (88), Expect = 1e-04
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEE 254
RE V AKLAEQAERY++M MK+V + +LS EE
Sbjct: 5 RENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEE 42
Score = 35.1 bits (77), Expect = 0.003
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
N++GARR+SWR+ISSIE
Sbjct: 52 NIIGARRASWRIISSIE 68
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.3 bits (60), Expect = 0.33
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 84 SNNGISEINIFHRPRCPSIREELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEESKA 263
S + E+N++ + CPS +E + AER + + T ++ + E A
Sbjct: 258 SEDYAQEVNLYSQGGCPSDDDEEENIMSASIYAERMITLVGDVNGKTALLIDDTIENPTA 317
Query: 264 FFPLP---YKQCGRRPTVIMASHFLY 332
F K+CG + +++ +H ++
Sbjct: 318 FIVASEHLVKRCGAKRVIVIGTHGIF 343
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 45 KKFCIC*LITVYPSNNGISEINIFHRPRCPSIREELV 155
+KFC+C +++ + IS++N RC ++ +EL+
Sbjct: 311 EKFCLCGKESIHARCSNISKVNT-EPFRCENVCDELL 346
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 235 TPVSVTSFIAAAMSSYRSACSANLARCT 152
TP S SF+++++SS S+ +L +CT
Sbjct: 160 TPPSKPSFLSSSVSSPASSKQKSLFQCT 187
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 61 QMQNFFVFPRRFSARGIH 8
QM NF++FP AR H
Sbjct: 55 QMANFYIFPLLLEARSDH 72
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 138 IREELVQRAKLAEQAERYD 194
+R+ QRA+L E+AER D
Sbjct: 528 LRDARAQRAQLIEKAERID 546
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 221 DGNRRRAQQRRKQSL 265
DGNRR A+QRR +++
Sbjct: 43 DGNRRWARQRRMETI 57
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 23.4 bits (48), Expect = 9.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 252 ESKAFFPLPYKQCGRRPTV 308
+S + +PLP+ + GRR +
Sbjct: 545 DSNSLYPLPHSKVGRRKNI 563
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 156 VLVPPLSTDIVDDGRY 109
V V PL T I+DDGR+
Sbjct: 654 VPVDPLITSILDDGRW 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,475
Number of Sequences: 5004
Number of extensions: 22721
Number of successful extensions: 50
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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