Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D07
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 48 2e-06
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 41 3e-04
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 39 9e-04
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 39 9e-04
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 38 0.002
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 38 0.002
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 36 0.011
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 30 0.53
07_03_1060 + 23641603-23641959 29 1.2
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 27 2.9
08_02_1217 - 25347555-25347600,25348519-25348649,25348753-253491... 27 3.8
11_06_0179 + 20952070-20955228 27 5.0
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 27 5.0
07_03_0565 - 19561078-19561425,19562253-19563746 26 6.6
06_03_0244 + 18637406-18637511,18637576-18638123 26 6.6
06_02_0307 + 14122217-14122459 26 6.6
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 26 8.7
03_04_0191 - 18293842-18294273 26 8.7
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEESKAFFPLPYKQ 287
RE++V+ AKLAEQAERYDDM MK + V++S EE + F + +K+
Sbjct: 4 REKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEE-RLLFSVGFKK 51
Score = 28.3 bits (60), Expect = 1.6
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 292 VGARRSSWRVISSIE 336
+GARR+SWR++ S+E
Sbjct: 53 IGARRASWRILESLE 67
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTET-GVELSNEESKAFFPLPYK 284
REE V AKLAEQAERY++M M++V +T VE E + + YK
Sbjct: 3 REENVYMAKLAEQAERYEEMVEYMEKVAKTVDVEELTVEERNLLSVAYK 51
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR++SSIE
Sbjct: 52 NVIGARRASWRIVSSIE 68
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEE 254
REE V AKLAEQAERY++M M++V +T EL+ EE
Sbjct: 9 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEE 48
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR+ISSIE
Sbjct: 58 NVIGARRASWRIISSIE 74
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEE 254
REE V AKLAEQAERY++M M++V +T EL+ EE
Sbjct: 227 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEE 266
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR+ISSIE
Sbjct: 276 NVIGARRASWRIISSIE 292
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEVTET 230
REE V AKLAEQAERY++M M++V +T
Sbjct: 8 REENVYMAKLAEQAERYEEMVEFMEKVAKT 37
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR+ISSIE
Sbjct: 57 NVIGARRASWRIISSIE 73
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3
Query: 141 REELVQRAKLAEQAERYDDMAAAMKEV 221
REE+V AKLAEQAERY++M M++V
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKV 36
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR++SSIE
Sbjct: 62 NVIGARRASWRIVSSIE 78
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 286 NVVGARRSSWRVISSIE 336
NV+GARR+SWR+ISSIE
Sbjct: 35 NVIGARRASWRIISSIE 51
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 29.9 bits (64), Expect = 0.53
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 102 EINIFHRPRCPSIREELVQRAKLAEQAERYDDMAAAMKEVTETG 233
E N+F +C SI ELV A L + +R D A + VTE G
Sbjct: 279 EFNVFLEKKCISISMELV-TAVLGDHGQRPKDDYAVITAVTELG 321
>07_03_1060 + 23641603-23641959
Length = 118
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 205 AAMSSYRSACSANLARCTSSSLIDGHRGR 119
A M+ R CS RC S +LI+G GR
Sbjct: 78 AVMAEVRERCSGGGRRCGSGALIEGGGGR 106
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 12 IPRAENRRGKTKKFCIC*LITVYPSNNGISEI 107
+ RA+N GKT FCI L + P N I +
Sbjct: 188 LARAKNGTGKTAAFCIPALEKIDPEKNAIQVV 219
>08_02_1217 -
25347555-25347600,25348519-25348649,25348753-25349190,
25352581-25352674,25352794-25352891
Length = 268
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 214 FIAAAMSSYRSACSANLARCTSSSLIDGHRGRWKILISLM 95
FIA+++S+ S R L+ GH RW + I L+
Sbjct: 156 FIASSISTLHSTLVLASPRSGLQPLVHGHGNRWVVRIHLL 195
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 227 FRHFLHRG-RHVIISFSLLSQLGALY*FLPYRRTSWTMEDIDFTDAIVGRV 78
F H +H G R +L Q+G ++ + WT ID + +G +
Sbjct: 922 FSHLVHTGQRDSTWQIDILPQVGEIWCIYMNWTSDWTPSSIDMCEFAIGEI 972
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +3
Query: 93 GISEINIFHRPRCPSIREELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEES 257
G EI P S+ + + ++ +RY+D+ ++ + G + SN+ S
Sbjct: 232 GTEEIGDDDMPDLESLNYDDLDSVSKLQKTQRYNDIMQKVENALQKGTDFSNQRS 286
>07_03_0565 - 19561078-19561425,19562253-19563746
Length = 613
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Frame = -3
Query: 287 LFIRQRKEGFAFFVAELDAGFRHF-------LHRGRHVI 192
L IR+ F FF E DAG RH LHRG+ +
Sbjct: 217 LRIRRADHSFLFFGEEADAGGRHLPPGSLLVLHRGKREV 255
>06_03_0244 + 18637406-18637511,18637576-18638123
Length = 217
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 57 IC*LITVYPSNNGISEINIFHRPRCPSIR 143
+C I PS+ GIS + I++RP +++
Sbjct: 187 VCGTIQSQPSDEGISTVRIWYRPPSRTVK 215
>06_02_0307 + 14122217-14122459
Length = 80
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 197 HGGRDEGSDGNRRRAQQRR 253
HG DE DG+ RR++QRR
Sbjct: 62 HGIDDEDCDGDGRRSRQRR 80
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 87 NNGISEINIFHRPRCPSIREELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEESKAF 266
N G+SE++ R +++ + ++A + D +A M G + EES++F
Sbjct: 2068 NAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEESRSF 2127
Query: 267 FPLPYKQCGRRPT 305
F Y++ RR T
Sbjct: 2128 F---YRRLRRRVT 2137
>03_04_0191 - 18293842-18294273
Length = 143
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 195 HHIVQPAQPTWRVVLVPPL 139
HHI P+QP W V+L PL
Sbjct: 24 HHI--PSQPRWVVILYSPL 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,537,182
Number of Sequences: 37544
Number of extensions: 173105
Number of successful extensions: 508
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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