Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D06
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    30   0.11 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    30   0.11 
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    25   4.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    24   7.2  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    24   7.2  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    24   7.2  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    24   9.6  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         24   9.6  

>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 159 ITWADDLFASIDTIKETVNTIQTTILSP-ISSEINKTSFPLPPPVNIHRIPASC 1
           + W D  F  ++ + + VN + T I  P +SSEI K       PVN   IP  C
Sbjct: 70  VEWRDRGFL-VEDLSDDVNMVLTAIDDPSLSSEIYKLCKSKKIPVNAADIPPEC 122


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 132 SIDTIKETVNTIQTTILSPISSEINK----TSFPLPPPVNIHRIP 10
           S D +  + NT   +  S  SSE N+    T++P+ PP NI  IP
Sbjct: 376 SDDNVGSSANTAPNSPTSANSSEGNQGNGPTTYPIKPPTNISEIP 420


>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 126 DTIKETVNTIQTTILSPIS 70
           DT+KE     +TT+L PIS
Sbjct: 101 DTVKELDGPFRTTVLDPIS 119


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -2

Query: 135 ASIDTIKETVNTIQ-----TTILSPISSEINKTSFPLPPP 31
           A ID + E++N+ +     +T   P  SEIN +SF  P P
Sbjct: 7   AGIDFVTESINSERARNRWSTSHIPSLSEINPSSFQSPSP 46


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 72  SSEINKTSFPLPPPVNIH 19
           S EIN TS+ L PP+ ++
Sbjct: 236 SPEINSTSYSLKPPIPLN 253


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 186 SSRRR*PFTITWADDLFASIDTIKETVNTIQTTILSPISSEINKTSFPLP 37
           S R+R      WA D     D + + +    +TIL  + +E   + FP P
Sbjct: 175 SKRKRTKLQPKWATD-----DAVSQLLQATPSTILENLETESTTSFFPSP 219


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 147 DDLFASIDTIKETVNTIQTTILSPIS-SEINK 55
           DD F+  +T+K  +  + TT  S  + SEIN+
Sbjct: 379 DDFFSQCETVKNELENVTTTPNSTEAFSEINE 410


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 144 DLFASIDTIKETVNTIQTTILSPISSEINKTSFPLPPPVNIHRIP 10
           DLF S+  +++ +  + +   S I  +    +    P V++H IP
Sbjct: 58  DLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIP 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,123
Number of Sequences: 5004
Number of extensions: 31406
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)