Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D06
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0256 - 8362374-8363003                                           29   0.97 
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824...    27   6.9  
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    27   6.9  
01_03_0228 - 13969617-13969987,13971205-13971351,13971452-13971590     27   6.9  
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198...    27   6.9  
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    26   9.1  
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711...    26   9.1  
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232           26   9.1  

>02_02_0256 - 8362374-8363003
          Length = 209

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 45  PLPPPVNIHRIPAS 4
           PLPPP+ IHR+PA+
Sbjct: 83  PLPPPLPIHRVPAA 96


>07_03_0906 +
           22481456-22481802,22482105-22482186,22482299-22482400,
           22483005-22483315,22483948-22484044,22484522-22484696,
           22485074-22485150,22485632-22486027,22486254-22486303,
           22487315-22487382,22488142-22488701
          Length = 754

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 209 LDRRCNVAVVGDGNHLPSHGPTT 141
           LD   N+A++G+G  LPS  PTT
Sbjct: 589 LDTLANLAILGEGESLPSQ-PTT 610


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 KWLPSPTTATLHRRSNQFTNT 225
           +W P+PT    H RS QF+ T
Sbjct: 25  RWKPAPTHTHTHYRSPQFSQT 45


>01_03_0228 - 13969617-13969987,13971205-13971351,13971452-13971590
          Length = 218

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 76  GREDGCLNGVYGFFYCINGRKQVVGPCDG-KWLPSPTTATLHR 201
           G+E GC++GV    +   GRK++    +  + +PS   ATL R
Sbjct: 152 GKEKGCVDGVVNKLFKNVGRKRIEIDLEAIRDVPSGERATLRR 194


>01_03_0075 -
           12218501-12218611,12219028-12219267,12219698-12219815,
           12219949-12220016,12220124-12220375,12221362-12221463,
           12221734-12221802,12221892-12221987,12222161-12222208,
           12222352-12222479,12222818-12222896,12223651-12223797,
           12223956-12224022,12224655-12224830,12225588-12225755,
           12225879-12225992,12226657-12226722,12227306-12227524,
           12228142-12228321,12228481-12228584,12228998-12229277,
           12230582-12231004
          Length = 1084

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 291 VRNYNLVII*EVDSILIVLTQKSLLI 368
           +RN+N  +I EVDSILI   +  L+I
Sbjct: 276 LRNFNYCVIDEVDSILIDEARTPLII 301


>09_04_0247 +
           16030543-16031324,16032812-16033088,16033374-16033559,
           16033714-16033866,16034277-16034702,16035922-16037668,
           16037687-16038183,16038519-16038709,16038786-16038941,
           16040077-16040311,16040416-16040723,16041279-16041439,
           16041852-16041895,16041975-16042067
          Length = 1751

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 72  SSEINKTSFPLPPPVNI 22
           S +++KT  P PPPVN+
Sbjct: 855 SMQVSKTEEPKPPPVNV 871


>07_03_1050 -
           23570785-23570824,23570938-23571004,23571114-23571196,
           23572028-23572201,23572268-23572471,23572570-23573300
          Length = 432

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 84  LSPISSEINKTSFPLPPPVNIHRIPA 7
           LS +  EI +    +PPPV + R+P+
Sbjct: 175 LSKLDMEIRELLIGIPPPVAVDRLPS 200


>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
          Length = 549

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 156 TWADDLFASIDTIKETVNTIQTTILSPISSEINK-TSFPLPPPVNIHRI 13
           TW      +  T   + N  QTT L+ + +  +K  S   PP +N+H +
Sbjct: 234 TWDSSSNTTQTTWDSSSNKTQTTTLAALDTNASKQNSSSGPPEINMHAV 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,507
Number of Sequences: 37544
Number of extensions: 203394
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)