Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D06
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical p...    27   4.6  
U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical
           protein F25B5.3a protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 132 SIDTIKETVNTIQTTILSPISSEINKTSFPLPPPVNIHRIPASC 1
           S+ + KET+N  +T   +P+S+ ++++ F +     I    A+C
Sbjct: 6   SVFSSKETINCTETLTDTPLSATLDQSQFSMFKAAEIVNAAAAC 49


>Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 115 FYCINGRKQVVGPCDGKWLPSPTTATLHRRSN 210
           F C  G + V    D     SPTT+T HRR N
Sbjct: 16  FGCETGNEDVQECIDKSPNGSPTTSTTHRRQN 47


>Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 115 FYCINGRKQVVGPCDGKWLPSPTTATLHRRSN 210
           F C  G + V    D     SPTT+T HRR N
Sbjct: 16  FGCETGNEDVQECIDKSPNGSPTTSTTHRRQN 47


>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 169 LPSPTTATLHRRSNQFTNT*ILCLEEDDKSETGGIIRINL 288
           LP P+T TL    + F    I  + ++ K+ T G+  +NL
Sbjct: 131 LPEPSTTTLSPSQHVFQTNPIWTILKNSKNGTQGVGAVNL 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,227
Number of Sequences: 27780
Number of extensions: 179822
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)