Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D04
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   123   7e-30
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   1.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   1.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   2.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   5.6  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    24   5.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   5.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    24   5.6  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    23   9.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    23   9.9  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    23   9.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   9.9  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    23   9.9  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  123 bits (296), Expect = 7e-30
 Identities = 57/88 (64%), Positives = 65/88 (73%)
 Frame = +1

Query: 10  VTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKEKVIKEVIPAQYLDEKTVIH 189
           VT EY    GA +P+RV T+VVS QH+D I  E LR EI EK+IK  +PA  LDEKTV H
Sbjct: 171 VTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYH 230

Query: 190 INPCGLFIIGGPQSDAGLTGRKIIVDTY 273
           I P G F++GGPQ DAGLTGRKIIVDTY
Sbjct: 231 IQPSGRFVVGGPQGDAGLTGRKIIVDTY 258


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 300  APTMSSPPTIRIDDDLTSSQTSVRLRSTNDEESARVD 190
            APT SS     +D  +++++ S R +   +EE+ R D
Sbjct: 1221 APTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGD 1257


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 197 GLMWITVFSSRYCAGMTSLITFSLISSRNVS-NSILSECCS 78
           GL W+  FS+ +  G+T  + + L   + VS N  L+ C S
Sbjct: 407 GLFWVMGFSAIFGNGITQNVIWMLSDRKVVSKNHTLNHCSS 447


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 186 PHQPVRTLHHWWTSV*RWFDWT 251
           P+ P + +HH+W  V  WFD T
Sbjct: 584 PNGPPKYIHHFW--VHTWFDKT 603


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +1

Query: 94  KIELETLRDEIKEKVIKEVIPAQYLDEKTVIHINPCGLFIIGG 222
           ++ L    DE+ EK++K +    ++D   ++  +   + I+ G
Sbjct: 773 RMSLSFSDDEMAEKILKAIYVTYHMDSPDILFASAEAMSILAG 815


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 236 ASD*GPPMMKSPHGLMWITVFSSRYCAGMTSLI 138
           A D G P++ +  G +  T+   RYCAG    I
Sbjct: 103 AMDSGKPLVSNARGDVDGTIALLRYCAGWADKI 135


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 146 SLITFSLISSRNVSNSILSECCSDTTT 66
           S +T  LISS    NS+  E  +D+ T
Sbjct: 168 SFVTHDLISSSKDGNSLTHEFANDSVT 194


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 70  VVSLQHSDKIELETLRDEIKEKVIKEVIPAQ 162
           +V++  S+K+EL+ LR+   EK I++V  A+
Sbjct: 683 LVTITMSEKVELDLLRE---EKAIRQVQEAE 710


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 77  DTTTV*TRWGTVAPPANTYSQVTP 6
           + TTV      VAP +N Y Q+ P
Sbjct: 31  ENTTVLNELEKVAPDSNIYKQIGP 54


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 270 RIDDDLTSSQTSVRLRSTNDEESARVDVDNSF 175
           R+++    +  S +L S +D+E ARV  D  F
Sbjct: 439 RVNNTSFGTYLSEKLASFDDDEEARVSRDEYF 470


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 49  PQRVHTVVVSLQHSDK-IELETLRDEIKEKVIKEVIPAQY 165
           P+  H ++ ++ + D+ +E+E LR   K   I ++IP QY
Sbjct: 561 PRFHHQLMPNIVYIDETVEIEVLRALEKFGHIVDLIPVQY 600


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 3227

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 47 TVAPPANTYSQVTPR 3
          T +PP N YSQ  PR
Sbjct: 4  TKSPPKNQYSQPPPR 18


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 185 ITVFSSRYCAGMTSLITFSLISSRNVSNSILSE 87
           I+ F  RY    +     S+I +RN    ILSE
Sbjct: 154 ISPFEERYFVATSGDGVLSVIDARNFKKPILSE 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,829
Number of Sequences: 5004
Number of extensions: 20070
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)