Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D04
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 118 9e-28
01_02_0051 - 10655867-10657057 118 9e-28
01_03_0090 - 12347165-12348349 117 2e-27
11_01_0271 + 2039100-2041760 29 0.70
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 28 1.6
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 28 1.6
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 27 3.7
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 27 3.7
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834... 26 4.9
11_06_0289 - 21969248-21973516 26 6.5
04_04_0275 - 24084328-24084564,24084660-24084995 26 6.5
06_03_0036 - 15753231-15753271,15754538-15754642,15755494-15755644 25 8.6
05_01_0173 - 1199668-1199685,1199907-1199969,1200277-1200379,120... 25 8.6
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 25 8.6
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 25 8.6
>05_01_0264 + 2030080-2031270
Length = 396
Score = 118 bits (284), Expect = 9e-28
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +1
Query: 10 VTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKEKVIKEVIPAQYLDEKTVIH 189
VT EY GA VP RVHTV++S QH + + + + ++KE VIK VIP QYLDEKT+ H
Sbjct: 175 VTVEYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFH 234
Query: 190 INPCGLFIIGGPQSDAGLTGRKIIVDTY 273
+NP G F+IGGP DAGLTGRKII+DTY
Sbjct: 235 LNPSGRFVIGGPHGDAGLTGRKIIIDTY 262
>01_02_0051 - 10655867-10657057
Length = 396
Score = 118 bits (284), Expect = 9e-28
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +1
Query: 10 VTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKEKVIKEVIPAQYLDEKTVIH 189
VT EY GA VP RVHTV++S QH + + + + ++KE VIK VIP QYLDEKT+ H
Sbjct: 175 VTVEYQNDNGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFH 234
Query: 190 INPCGLFIIGGPQSDAGLTGRKIIVDTY 273
+NP G F+IGGP DAGLTGRKII+DTY
Sbjct: 235 LNPSGRFVIGGPHGDAGLTGRKIIIDTY 262
>01_03_0090 - 12347165-12348349
Length = 394
Score = 117 bits (282), Expect = 2e-27
Identities = 52/88 (59%), Positives = 66/88 (75%)
Frame = +1
Query: 10 VTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKEKVIKEVIPAQYLDEKTVIH 189
VT EY+ GA VP RVHTV++S QH + + + + ++KE VIK VIP +YLDEKT+ H
Sbjct: 174 VTVEYLNDAGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPDKYLDEKTIFH 233
Query: 190 INPCGLFIIGGPQSDAGLTGRKIIVDTY 273
+NP G F+IGGP DAGLTGRKII+DTY
Sbjct: 234 LNPSGRFVIGGPHGDAGLTGRKIIIDTY 261
>11_01_0271 + 2039100-2041760
Length = 886
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 224 GPPMMKSPHGLMWITVFSSRYCAGMTSLITFSLISSRNVS 105
G PM++ H ++ F A + SL+T L+ SR VS
Sbjct: 221 GDPMLRGNHPYRFMVFFYFNTTAFVASLVTIMLLMSRTVS 260
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 288 SSPPTIRIDDDLTSSQTSVRLRSTNDEESARVDVDNSFFIEIL 160
SSPP RI DDL+S + + N EE + + + E+L
Sbjct: 503 SSPPDDRILDDLSSQAEEITSNADNPEEVSDISDNRDDSSELL 545
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 27.9 bits (59), Expect = 1.6
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 30 CWWSYRAPASSYRSCIA 80
C+W Y+ P+ Y SC++
Sbjct: 123 CFWGYKVPSGLYNSCLS 139
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 96 FVRMLQRYNYGMNSLGHGSSTSKYVFASNP 7
F +M RY G+N LGHG + Y+ S P
Sbjct: 242 FEKMEARYG-GLNMLGHGDVSFPYLIESFP 270
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 3 TRGYLRIRICWWSYRAPASSYRSCI 77
+R L C+W Y+ P Y SC+
Sbjct: 106 SRRNLTNHACFWGYKVPFGLYNSCL 130
>03_05_0222 +
22082863-22082938,22083261-22083333,22083451-22083496,
22083639-22083753,22083847-22083926,22084022-22084621,
22084718-22084822,22084916-22085248
Length = 475
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 285 SPPTIRIDDDLTSSQTSVRLRSTND 211
+PP I ID+D + T VR+ S N+
Sbjct: 47 NPPRIEIDNDSCNDATIVRVDSANE 71
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 3 TRGYLRIRICW--WSYRAPASSYRSCIAATF*QNRIRDI 113
T+G LR + W WS R + +R+ I ++R RD+
Sbjct: 93 TKGRLRRHLWWVYWSLRKMVAQHRAAIQLRQLKDRARDV 131
>04_04_0275 - 24084328-24084564,24084660-24084995
Length = 190
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 103 LETLRDEIKEKVIKEVIPAQ 162
LE ++E KEK++ E++PA+
Sbjct: 139 LEAKQEEWKEKIVTEILPAR 158
>06_03_0036 - 15753231-15753271,15754538-15754642,15755494-15755644
Length = 98
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 300 APTMSSPPTIRIDDD-LTSSQTSVRLRSTNDEESARVDVDNSFFIEI 163
A T S P + D D T+S TS S+N + + +D+ + IEI
Sbjct: 53 AVTQQSTPAVHTDQDGRTTSPTSPTSTSSNTTQGMTL-MDDDYMIEI 98
>05_01_0173 -
1199668-1199685,1199907-1199969,1200277-1200379,
1201408-1201514
Length = 96
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 203 PHGLMWITVFSSRYCAGMTSLITFSLIS 120
PH W TV CA M L++F L S
Sbjct: 18 PHNKRWHTVAGKGLCAVMCLLLSFCLNS 45
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 118 HAMSLIRFCQNVAAIQLRY 62
H+M L+R+C NV LRY
Sbjct: 45 HSMLLMRYCTNVMDHNLRY 63
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 149 TSLITFSLISSRNVSNSILSECCS 78
TS++ + S+ ++SNSI S+ CS
Sbjct: 2018 TSMVEIPITSNHHLSNSISSKTCS 2041
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,047,842
Number of Sequences: 37544
Number of extensions: 135490
Number of successful extensions: 430
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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