Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D04
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   7.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   7.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 215 MMKSPHGLMWITVFSSRYCAG 153
           MMKS  G+MWI +     C+G
Sbjct: 1   MMKSLVGIMWIVLVLISGCSG 21


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 295 HHELPTHHTYRR*SYVQSNQRQTEVHQ 215
           HH L  HH + + + VQ + R  +  Q
Sbjct: 141 HHHLQNHHHHLQSTAVQDHHRPYQQQQ 167


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -1

Query: 303 SAPTMSSPPTIRIDDDL 253
           ++PT+S+PPT+ + + +
Sbjct: 27  ASPTLSTPPTLNLMEQI 43


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 EKVIKEVIPAQYLDEK 177
           EKV KE I  ++ +EK
Sbjct: 246 EKVAKEDIQVRFFEEK 261


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 EKVIKEVIPAQYLDEK 177
           EKV KE I  ++ +EK
Sbjct: 246 EKVAKEDIQVRFFEEK 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,141
Number of Sequences: 438
Number of extensions: 1356
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)