Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D03
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 192 2e-50
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 72 5e-14
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 49 4e-07
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 48 7e-07
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 44 1e-05
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 38 0.001
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 0.60
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 5.6
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 7.4
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 7.4
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 25 7.4
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 7.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.8
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.8
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 25 9.8
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 192 bits (469), Expect = 2e-50
Identities = 85/155 (54%), Positives = 120/155 (77%)
Frame = +3
Query: 87 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 266
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 267 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPY 446
QT+ + ++++NLY+ +E R ++PKTF+ ++S+ LYEKRFGPY PV+AG+ DNTP+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 447 VCNMDLIGCPNEPEDSVVSGTCSEQLYGMCEALWE 551
+C D IGC + ED +VSGT +EQLYGMCE+++E
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYE 154
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 72.1 bits (169), Expect = 5e-14
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +3
Query: 105 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVLQ 281
NGG VA+ G +A D R + ++T F P+V ++G L +G G D +++
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 282 RLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLD 425
R++ R++LY R M ++ + M+ LLY KRF PY + +AG+D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 49.2 bits (112), Expect = 4e-07
Identities = 35/145 (24%), Positives = 68/145 (46%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 287
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 288 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPYVCNMDLI 467
K+ +++Y ++ T + + S + Y+ + ++AG D V ++ L
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLG 141
Query: 468 GCPNEPEDSVVSGTCSEQLYGMCEA 542
G ++ + + G+ S +YG C+A
Sbjct: 142 GSLHK-QPLAIGGSGSAFIYGFCDA 165
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 48.4 bits (110), Expect = 7e-07
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 287
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 288 KFRMNLYE--LKENRIMKPKTFSAMLSNLLYEKR--FGPYXIEPVIAGLDPYDNTPYVCN 455
++ + E + ++P LS +LY +R PY + ++AG+D + PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 456 MDLIG 470
DL G
Sbjct: 162 ADLRG 166
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 44.4 bits (100), Expect = 1e-05
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 287
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + ++ +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 288 KFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYXIEPVIAGLDPYDNTPYVCN 455
+ ++L + + + ++ + Y + G P+ + +IAG D DNTP V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 456 MDLIGCPNEPEDSVVSGTCSEQLYGMCEALWE 551
+ G N + + + G S+ E W+
Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWK 179
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/119 (22%), Positives = 46/119 (38%)
Frame = +3
Query: 105 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 284
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 285 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPYVCNMD 461
L L++L+ ++ S +LSN+ Y + + ++AG Y + D
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD 178
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 111 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 260
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -2
Query: 271 VCVSVARPGSPTYNVGPI*NTLGKLVETVWAWIPKRLSVAIATQSWPFI 125
+C +V ++ + T G +VE +W IP + + +A S+ +
Sbjct: 52 ICKAVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLL 100
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +3
Query: 162 KRFGIQAQTVSTNFPKVFQ 218
+RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 303 LYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPY 446
+Y K N+ + + S +L + + +EP A L P TPY
Sbjct: 583 IYSYKRNKNTEVQQRSVEFHLILNDSKLSKTILEPTPAPLPPPRTTPY 630
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 246 PGLATDTQTVLQRLKFRMN--LYELKENRIMKPK 341
P L D+ L +L R N +YE K R++KPK
Sbjct: 69 PFLNKDSGVDLLKLHSRSNSRIYEAKPKRVIKPK 102
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 239 NI*CWSHLKHFRKVG 195
N+ W+H+KH KVG
Sbjct: 172 NVQMWAHVKHIMKVG 186
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 163 NALVSRPKLSPPTFLKCFRWDQHYMLGSLVL 255
+AL+ P + +FL + D+H MLG L L
Sbjct: 357 SALIVAPFILASSFLSRWLEDRHIMLGGLFL 387
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 519 VPSRFQTLLNPRAHWGN-RSNPYY 451
+PSRF+T ++ H G + PYY
Sbjct: 546 IPSRFKTSISTEVHDGRLKKYPYY 569
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 489 PRAHWGNRSNPYYTH 445
P A +G + NPYY H
Sbjct: 254 PLAEFGEKDNPYYFH 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,872
Number of Sequences: 5004
Number of extensions: 52337
Number of successful extensions: 138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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