Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D03
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 195 2e-50
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 187 4e-48
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 63 2e-10
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 62 4e-10
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 41 6e-04
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 40 0.001
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 40 0.002
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 38 0.007
07_03_1256 - 25237465-25237590,25237833-25237918,25238025-252380... 31 0.81
01_03_0185 - 13565903-13565932,13565933-13566013,13566104-135661... 31 0.81
04_04_0601 + 26532487-26532553,26532732-26532797,26533440-265335... 29 1.9
09_03_0065 + 12013715-12013720,12013899-12014612 28 4.3
07_01_1106 - 10187609-10190041,10190292-10191932 28 4.3
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 27 7.5
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 195 bits (475), Expect = 2e-50
Identities = 91/155 (58%), Positives = 118/155 (76%)
Frame = +3
Query: 87 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 266
MSI YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 173
Query: 267 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPY 446
QT+ QRL FR LY+L+E R MKP+TF++++S LLYEKRFGPY +PVIAGL DN P+
Sbjct: 174 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGE-DNEPF 232
Query: 447 VCNMDLIGCPNEPEDSVVSGTCSEQLYGMCEALWE 551
+C MD IG +D VVSGT SE LYG CE++++
Sbjct: 233 ICTMDCIGAKELAKDFVVSGTASESLYGACESMYK 267
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 187 bits (456), Expect = 4e-48
Identities = 87/155 (56%), Positives = 115/155 (74%)
Frame = +3
Query: 87 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 266
+ I YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 10 LQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 69
Query: 267 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPY 446
QT+ QRL FR LY+L+E R MKP+ F++++S LLYEKRFGPY +PVIAGL D P+
Sbjct: 70 QTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDNDE-PF 128
Query: 447 VCNMDLIGCPNEPEDSVVSGTCSEQLYGMCEALWE 551
+C MD IG +D VVSGT SE LYG CE++++
Sbjct: 129 ICTMDCIGAKELAKDFVVSGTASESLYGACESMYK 163
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/114 (29%), Positives = 52/114 (45%)
Frame = +3
Query: 84 KMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATD 263
+ + NGG VA+ G D +A D R + +S + K+ + + G D
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGD 62
Query: 264 TQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLD 425
+ + + L + LYE N+ M + +LSN LY KRF PY V+ GLD
Sbjct: 63 VKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 116
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/107 (30%), Positives = 52/107 (48%)
Frame = +3
Query: 105 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 284
NGG VA+ G D +A D R + ++ + K+ ++ + G D + + +
Sbjct: 12 NGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKN 71
Query: 285 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLD 425
L R LY+ + N+ M + +LSN LY KRF PY V+ GLD
Sbjct: 72 LAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 118
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 41.1 bits (92), Expect = 6e-04
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Frame = +3
Query: 66 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 245
+F +Y + + G A V ++G D V + +K+ + Q S + K+ + + +
Sbjct: 17 LFQVEYALEAVR-KGNAAVGVRGSDTVVLGVEKKSTPKLQD-SRSVRKIASLDTHIALAC 74
Query: 246 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYXIEPVI 413
GL D + ++ R + + L + + + ++ L Y + G P+ + +I
Sbjct: 75 AGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 134
Query: 414 AGLDPYDNTPYVCNMDLIG 470
G DPY + P + D G
Sbjct: 135 VGFDPYTDKPALYQTDPSG 153
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +3
Query: 66 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 245
+F +Y + + G A V ++G D V + +K+ + Q S + K+ + + +
Sbjct: 87 LFQVEYALEAVR-KGNAAVGVRGTDTVVLGVEKKSTPKLQD-SRSMRKIASLDTHIALAC 144
Query: 246 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYXIEPVI 413
GL D + ++ R + + L + + + ++ L Y + G P+ + +I
Sbjct: 145 AGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 204
Query: 414 AGLDPYDNTPYVCNMDLIG 470
G DPY P + D G
Sbjct: 205 VGFDPYTEKPALYQTDPSG 223
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 39.5 bits (88), Expect = 0.002
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 3/140 (2%)
Frame = +3
Query: 36 NNIRKNILQ*IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVF 215
+N +N + + + KM G +V + QD V + D R N K+
Sbjct: 16 DNCARNAM--LVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIH 73
Query: 216 QMGPTLYVGLPGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPY 395
M P +Y G A DT+ V + ++ L+ R + T +L + L+ + G
Sbjct: 74 YMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQ-GHV 132
Query: 396 XIEPVIAGLD---PYDNTPY 446
V+ G+D P+ +T Y
Sbjct: 133 SAALVLGGVDVTGPHLHTVY 152
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 37.5 bits (83), Expect = 0.007
Identities = 29/148 (19%), Positives = 64/148 (43%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 287
G +V + V +A D R + K+ Q+ +YV G A DTQ + + +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 288 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPYVCNMDLI 467
++ ++ + ++ + K + ++ L Y+ + ++ G D Y+ + ++ L
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYEG-GQIFSVPLG 142
Query: 468 GCPNEPEDSVVSGTCSEQLYGMCEALWE 551
G + + G+ S LYG+ + W+
Sbjct: 143 GTILR-QPFAIGGSGSSYLYGLLDHEWK 169
>07_03_1256 -
25237465-25237590,25237833-25237918,25238025-25238083,
25238516-25238612,25239582-25239663,25239752-25240096
Length = 264
Score = 30.7 bits (66), Expect = 0.81
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Frame = +3
Query: 78 DYKMSILAYNGGAVVAMKGQDCVAIATDKRFG-IQAQTVSTNFPKVFQMGPTLYVGLPGL 254
DY + + G V ++G D V + T ++ + T TN + L G+PG
Sbjct: 85 DYAFNAVKLAGITSVGVRGDDSVYVLTHRKEDKLHDPTTITNLFAITDRIGLLATGMPG- 143
Query: 255 ATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEK----RFGPYXIEPVIAGL 422
D + + Q + + K M P + +++ + + PY + +I G+
Sbjct: 144 --DGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQHAQIRPYGVVSMIFGI 201
Query: 423 DPYDNTPYVCNMDLIG 470
D TP + D G
Sbjct: 202 DEEKGTPELFTCDPAG 217
>01_03_0185 -
13565903-13565932,13565933-13566013,13566104-13566175,
13566800-13566932,13567068-13567107,13567192-13567258,
13567453-13567719
Length = 229
Score = 30.7 bits (66), Expect = 0.81
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 420 LDPYDNTPYVCNMDLIGCPNEPEDSVVSGTCSEQLYGMCEA 542
LD ++ +D+ PN+ E+S+ C QLYG+ EA
Sbjct: 123 LDRFEEGAEQFRLDVAANPNDTEESIWCFLCEAQLYGVDEA 163
>04_04_0601 +
26532487-26532553,26532732-26532797,26533440-26533566,
26533861-26533975,26534377-26534436
Length = 144
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 399 IEPVIAGLDPYDNTPYVCNMD---LIGC-PNEPEDSVVSGTCSE 518
+E ++ G +NT Y+CNMD ++ C E + SV SG S+
Sbjct: 6 LEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSD 49
>09_03_0065 + 12013715-12013720,12013899-12014612
Length = 239
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 95 TSVQWRCSCCDEGPRLCGYRYGQTLWYPGPNCLHQLS 205
+S +WRC CC E YR G +CL +++
Sbjct: 114 SSARWRCDCCGERSDYWVYRSGSGNVTLNVSCLKKMA 150
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 524 QLFRAGSRHY*ILGLIGATD-QIHITHIWSVIVRIKTSYHWFNXIWSES 381
+LF R IL +G +D Q+HI ++ ++VR++T F S S
Sbjct: 165 RLFIHSKRRMHILPTLGYSDPQVHINRLFQLLVRVRTMVSSFGKSGSPS 213
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 291 FRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLD 425
F+ L+EL R + S +L+N+LY R I +IAG D
Sbjct: 67 FQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWD 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,305
Number of Sequences: 37544
Number of extensions: 323531
Number of successful extensions: 688
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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