Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D03
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 172 2e-43
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 46 2e-05
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 46 2e-05
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 38 0.004
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 29 1.7
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 29 2.9
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81043-7|CAN86898.1| 457|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81043-6|CAB02803.3| 491|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF040661-13|AAG24216.1| 351|Caenorhabditis elegans Hypothetical... 27 6.8
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 172 bits (418), Expect = 2e-43
Identities = 80/154 (51%), Positives = 105/154 (68%)
Frame = +3
Query: 87 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 266
MSI++Y GG VVAM G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 267 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPY 446
+TVL+++ FR NLYEL+ENR +KP+ S M+SNL Y+ RFG Y EP++AGLD N PY
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 447 VCNMDLIGCPNEPEDSVVSGTCSEQLYGMCEALW 548
+C MD IGC + P D V GT E L G+CE W
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFW 153
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 45.6 bits (103), Expect = 2e-05
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVLQR 284
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 285 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPYVCNMDL 464
L+ R++ Y M + +LS LY +RF PY ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 465 IGC 473
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 45.6 bits (103), Expect = 2e-05
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVLQR 284
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 285 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPYVCNMDL 464
L+ R++ Y M + +LS LY +RF PY ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 465 IGC 473
IGC
Sbjct: 170 IGC 172
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +3
Query: 66 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 245
+F +Y + G V ++G+DC+ I +K+ I A K+ + + +
Sbjct: 17 LFQVEYAQEAVK-KGSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAF 74
Query: 246 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRF------GPYXIEP 407
GL+ D + ++ R + Y+L + S ++N ++RF P+ I
Sbjct: 75 AGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISM 132
Query: 408 VIAGLDPYDNTP 443
+I G D +D TP
Sbjct: 133 LIGGFD-HDGTP 143
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 38.3 bits (85), Expect = 0.004
Identities = 34/147 (23%), Positives = 62/147 (42%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 287
G ++AM+ V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 288 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLDPYDNTPYVCNMDLI 467
K+ +++Y + EN+ + S + LY R ++AG D + V + +
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDE-ELGGQVYAIPIG 140
Query: 468 GCPNEPEDSVVSGTCSEQLYGMCEALW 548
G + + S SG+ S + G ++ W
Sbjct: 141 GFVSR-QRSTASGSGSTFVQGFLDSQW 166
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.045
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +3
Query: 144 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRLKFRMNLYELKEN 323
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 324 RIMKPKTFSAMLSNLLYEKRFGPYXIEPVIAGLD 425
+ S +N LY R + ++AG D
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD 176
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 108 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 287
G +V+A++ + V + TD+ N + +++ + + G D LQ +
Sbjct: 17 GTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHW-LQNV 75
Query: 288 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKR--FGPYXIEPVIAGLDPYDNTPYVCNMD 461
R L + ++ + PK L++LLY KR P V+AG++ + +
Sbjct: 76 IERQVLLWKRFDQDIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNNKETSTP 135
Query: 462 LIG 470
IG
Sbjct: 136 FIG 138
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -1
Query: 302 IHSEF*SLKHGLCVSCKTREPNI*CWSHLKHFRKVGGDSLGLDTKAFVRSDSHTVLALHR 123
IHS+ ++K L KT P + C H + S+ + + S VL H
Sbjct: 667 IHSDKMTIKKALASLAKTNRPALICNIHFPD--GIDPFSIIAERRLMYGVQSECVLCAHA 724
Query: 122 NNCTSIV 102
N+CT+++
Sbjct: 725 NDCTAMI 731
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 123 AMKGQDCVAIATDKRFGIQAQTVSTN 200
AMK +AIA G+QAQT TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 253 RPGSPTYNVGPI*NTLGKLVETVWAWI--PKRLSVAIATQSWPFIATTAPPLYAS 95
RP PT + + + T+W WI + S A ATQ W A P AS
Sbjct: 98 RPRPPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSAS 152
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 253 RPGSPTYNVGPI*NTLGKLVETVWAWI--PKRLSVAIATQSWPFIATTAPPLYAS 95
RP PT + + + T+W WI + S A ATQ W A P AS
Sbjct: 153 RPRPPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSAS 207
>Z81043-7|CAN86898.1| 457|Caenorhabditis elegans Hypothetical
protein C29F3.7b protein.
Length = 457
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +3
Query: 420 LDPYDNTPYVCNMDLIGCPNEPE-DSVVS-----GTCSEQLY 527
L Y+NT +C + I CP++ + D +VS G+ + QLY
Sbjct: 213 LQDYENTKSICKFEWILCPDDQDCDGIVSLDGTKGSVALQLY 254
>Z81043-6|CAB02803.3| 491|Caenorhabditis elegans Hypothetical
protein C29F3.7a protein.
Length = 491
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +3
Query: 420 LDPYDNTPYVCNMDLIGCPNEPE-DSVVS-----GTCSEQLY 527
L Y+NT +C + I CP++ + D +VS G+ + QLY
Sbjct: 247 LQDYENTKSICKFEWILCPDDQDCDGIVSLDGTKGSVALQLY 288
>AF040661-13|AAG24216.1| 351|Caenorhabditis elegans Hypothetical
protein W10G11.7 protein.
Length = 351
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 130 RAKTVWLSL-RTNALVSRPKLSPPTFLKCFRWDQHYMLGSLVLQLTHK 270
R+ +VW+ + RT A V++P T F W + G+ TH+
Sbjct: 122 RSASVWIGIQRTKACVNKPITVNCTITNSFEWTDNSTTGTDGFLFTHE 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,140
Number of Sequences: 27780
Number of extensions: 295657
Number of successful extensions: 686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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