Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D03
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 549 PRGLHTFRTIVPSRFQTLLN 490
           P G+HT  +IV +  QTL N
Sbjct: 66  PLGIHTGESIVVAPSQTLSN 85



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 423 DPYDNTPYVCNMD 461
           D YDN   VCNM+
Sbjct: 50  DAYDNCITVCNME 62


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 221 GTNIICWAPWSC 256
           G  +ICW P+ C
Sbjct: 279 GVFLICWVPFFC 290


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 461 IHITHIWSVIVRIKTSYHWFNXI 393
           I IT +  VI+R +T Y++FN I
Sbjct: 219 IDITFV--VIIRRRTLYYFFNLI 239


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 543 GLHTFRTIVPSRFQTLLNPRAHW 475
           G H F T +PS    +++  A W
Sbjct: 214 GYHLFHTYIPSALIVVMSWIAFW 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,076
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)