Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D02
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   1.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.3  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   4.0  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   7.0  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.0  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 368 IKNPLTRHGSAEMQLSTQLRAFACA*--PFSCVHICRHRMVRVTSVK 234
           + N  T   S E Q   +   F CA    +SCV  C HRM  V +++
Sbjct: 61  VSNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRMCHVCALR 107


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 19  FSNFHCSGVCLWRQRRECVW 78
           FS F   GVC +    ECVW
Sbjct: 459 FSRFRFGGVCNYLAETECVW 478


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -1

Query: 290 PFSCVHICRHRMVRVTSVKFIHTHAHNNTYMFNCKSDTYFKF 165
           P+ C  +C  R   +  +K+  TH+H    M   + +    F
Sbjct: 398 PYRC-EVCSKRYKNLNGLKYHRTHSHLQVSMAQAQREVQMNF 438


>SPAC1006.02 |||WD repeat protein, human GNB1L
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 46 CLWRQRRECVWRGHQK 93
          CL   R +C WR H K
Sbjct: 41 CLTSMRPKCAWRAHTK 56


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 163 LNLKYVSLLQLNIYVLLC 216
           LNL Y  LL L++Y+L C
Sbjct: 122 LNLHYADLLLLHLYLLNC 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,251
Number of Sequences: 5004
Number of extensions: 28081
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)