Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D02
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597...    27   5.2  
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624...    27   6.9  
11_01_0709 - 5821246-5821449,5821517-5821634,5821720-5821812,582...    27   9.1  

>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
            21559800-21560721,21560803-21561212,21561284-21561408,
            21561524-21561571,21561668-21561789,21562008-21562099,
            21562242-21562429,21562582-21562696,21562780-21562863,
            21562994-21563087,21563393-21563510,21563805-21563930,
            21564002-21564074,21564209-21564296,21564674-21564744,
            21564839-21564918,21565004-21565065,21565169-21565310,
            21565410-21565510,21565600-21565644,21565725-21565789,
            21566088-21566163,21566246-21566300,21566416-21566773
          Length = 1366

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 316  CVLSCISALPWRVNGFLISYYASLSGYNFVCYL 414
            C   C +AL  + +GFL+S  +SLS   ++ YL
Sbjct: 1092 CCARCKTALGLQEDGFLVSCSSSLSSKFYLTYL 1124


>12_02_0629 -
           21360831-21361310,21361391-21361663,21362212-21362488,
           21362590-21362735,21363207-21363416
          Length = 461

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 120 VICKDLNYFFYFNLPEFEIRITFAIKHIC 206
           ++C  L+     + PE+E+R+ +A +H C
Sbjct: 98  ILCAALDGLKLPSFPEYEVRVRYATEHRC 126


>11_01_0709 -
           5821246-5821449,5821517-5821634,5821720-5821812,
           5822065-5822198,5822281-5822559,5822645-5822730,
           5822814-5822906,5822998-5823090,5823192-5823299,
           5824034-5824060,5824538-5824766
          Length = 487

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 123 ICKDLNYFFYFNLPEFEIRITFAIKHICIIMCVCMYKLNGCYTDHSVS 266
           +C     +FYFNLPE +  +     H+     +C   LN    D +++
Sbjct: 315 VCMTYERYFYFNLPEVQQALHANRTHLPYGWSMCSDVLNYSNKDGNIN 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,512
Number of Sequences: 37544
Number of extensions: 173015
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)