Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D02
         (446 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   0.77 
BC128392-1|AAI28393.1|  782|Homo sapiens zinc finger protein 786...    31   1.4  
BC109245-1|AAI09246.1|  753|Homo sapiens ZNF786 protein protein.       31   1.4  
AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens ...    31   2.4  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 326 LSTQLRAFACA*PFSCVHICRHRMVRVTSV-KFIHTHAHNNTYMFNC 189
           + T +  + C   ++C+HIC         V  ++H HA+   +M+ C
Sbjct: 127 ICTHMHTYMCIHMYTCIHICVFMCTMHAYVYSYVHMHAYVCVHMYTC 173


>BC128392-1|AAI28393.1|  782|Homo sapiens zinc finger protein 786
           protein.
          Length = 782

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 329 QLSTQLRAFACA*PFSCVHICRHRMVRVTSVKFIHTHAHNNTYMFNCK 186
           +L++  RA     PF C H C  R  R+  +  +H HAH     F+C+
Sbjct: 383 RLASPCRAHTGEKPFQCAH-CTKRF-RLRRLLQVHQHAHGGERPFSCR 428


>BC109245-1|AAI09246.1|  753|Homo sapiens ZNF786 protein protein.
          Length = 753

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 329 QLSTQLRAFACA*PFSCVHICRHRMVRVTSVKFIHTHAHNNTYMFNCK 186
           +L++  RA     PF C H C  R  R+  +  +H HAH     F+C+
Sbjct: 354 RLASPCRAHTGEKPFQCAH-CTKRF-RLRRLLQVHQHAHGGERPFSCR 399


>AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32873 fis, clone TESTI2003998, weakly similar to
           T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 170

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -1

Query: 299 CA*PFSCVHIC-------RHRMVRVTSVKFIHTHAHNNTYMFNC 189
           CA  ++C H C       RH + R  + K  HTH H   +M  C
Sbjct: 22  CAHAYTCKHACTHVHTPHRHALTRTDTPKHAHTHVHIYAHMQIC 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,958,330
Number of Sequences: 237096
Number of extensions: 955107
Number of successful extensions: 1876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)