Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D02
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    28   3.6  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    27   8.2  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    27   8.2  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    27   8.2  

>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 87  SKSRFLKQAV*VICKDLNYFFYFNLPEFEIRITFAIKHICIIMCV-CMYKL 236
           S S +L     +I   LN FF    P+F  +I FAIK   I++C+  +Y+L
Sbjct: 97  SMSLYLGNEYQIILVALNRFFALFFPQFYSKI-FAIKPSLIVICLFYVYRL 146


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 266 RHRMVRVTSVKFI--HTHAHNNTYMFNCK 186
           R R+ RVT VK +  H HA++N Y  N K
Sbjct: 298 RDRLNRVTVVKSLETHVHANHNIYFVNVK 326


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 201 ICIIMCVCMYKLNGCYTDHSVSTDVNA*KWLRARKRTQLRTQLHFRAAVAG*WILNILLR 380
           I I+ CV  + +  C  D+ + T ++    L    RT + T  H+   VAG   ++ ++ 
Sbjct: 503 ITIVSCVTPFFM--CMLDYGIFTTLSTVHTLM--NRTNIDTPAHYELKVAGNSSMSDVMN 558

Query: 381 EFI 389
           EF+
Sbjct: 559 EFL 561


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 290 PFSCVHICRHRMVRVTSVKFIHTHAHNNTYMFNCKSDTY 174
           PF C   C +  V  + +   H  +H N Y F C   TY
Sbjct: 572 PFQCKK-CAYNCVNKSMLNS-HMKSHTNHYQFRCMDCTY 608


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 290 PFSCVHICRHRMVRVTSVKFIHTHAHNNTYMFNCKSDTY 174
           PF C   C +  V  + +   H  +H N Y F C   TY
Sbjct: 594 PFQCKK-CAYNCVNKSMLNS-HMKSHTNHYQFRCMDCTY 630


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 290 PFSCVHICRHRMVRVTSVKFIHTHAHNNTYMFNCKSDTY 174
           PF C   C +  V  + +   H  +H N Y F C   TY
Sbjct: 594 PFQCKK-CAYNCVNKSMLNS-HMKSHTNHYQFRCMDCTY 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,704
Number of Sequences: 27780
Number of extensions: 167014
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)