Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D01
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 66 2e-12
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 37 0.002
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 33 0.027
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 29 0.58
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 1.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 2.3
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 26 4.1
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 5.4
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 7.2
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 7.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.2
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 25 9.5
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 25 9.5
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 25 9.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 66.5 bits (155), Expect = 2e-12
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 383 RVTNCYKWYTSNAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
R+++ YK F R E+G++S WRGN ANV+RYFPTQALNFAFKDK+
Sbjct: 66 RLSHRYKGI-GECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKF 115
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 401 KWYTS--NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 520
K YTS + V+I +GL+ F+RGN N +R FP A+ FA
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFA 95
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 33.1 bits (72), Expect = 0.027
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 359 HCTAEQICRVTNCYKWYTSNAFVRIPKEQGL 451
HC E+ CR NC Y +NA V + ++ G+
Sbjct: 496 HCCKEESCRTENCKGAYPANATVTVEEDSGM 526
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 37 IDRISKKCTHLPLCSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPPKEDHI 207
+ R+S+K L + +C H + NR + GFS SF VR+ +E I
Sbjct: 232 LKRLSRKFRFLKV-TCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNGEEQKI 287
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 338 LLAPMSPHCTAEQICRVTNCYKWYTSNAFVR 430
L+APM P + QI C++ YTSN + R
Sbjct: 597 LVAPM-PTASTSQILGFNECFEPYTSNMYQR 626
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 67 LPLCSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKY 186
+PLC D+ +LL + G RG+ I + K F + +
Sbjct: 165 VPLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHF 204
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 410 TSNAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
T + +I K +G +RG ++ P +AL FA D Y
Sbjct: 48 TFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTY 89
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 329 CVKLLAPMSPHCTAEQICRVTNCYKWYTSNAFVRIP 436
CV L++ + P T E+ C V + ++W + R P
Sbjct: 1295 CV-LVSGLQPPDTREEQCSVDDAFEWRQPTGYKRTP 1329
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PTATSGIRRTPSSAFPR 440
P+ATS I++ PSS F R
Sbjct: 587 PSATSSIKKNPSSIFRR 603
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 410 TSNAFVRIPKEQGLLSFWRGNFANV 484
T +AF +I K +GL +F+RG F ++
Sbjct: 233 TFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPT 502
N + + +GL F+RG + V Y PT
Sbjct: 121 NTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 356 PHCTAEQICRVTNCYKWYTSNAFVRIPKEQG 448
P+ +E+ T+ W T A RIP+ G
Sbjct: 51 PYAVSEKAGHQTSAESWGTGRALARIPRVGG 81
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 266 SQESLWRTRLDRRDSTFCSIMWSSLGGYLRTRK 168
S+ + TRL DS CS + S GG R K
Sbjct: 99 SRSPIPSTRLKENDSRLCSPLASPTGGLKRPAK 131
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 356 PHCTAEQICRVTNCYKWYTSNAFVRIPKEQG 448
P+ +E+ T+ W T A RIP+ G
Sbjct: 51 PYAVSEKAGHQTSAESWGTGRALARIPRVGG 81
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 378 ICSAVQCGDIGASNLTQHQMGSYRACHSE 292
+C+ + C I A+ Q GSY C ++
Sbjct: 394 VCNEISCDGITANGTYPGQYGSYSYCDAK 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,872
Number of Sequences: 5004
Number of extensions: 54713
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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