Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D01
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    75   3e-14
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    72   3e-13
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    72   3e-13
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    72   3e-13
Z82059-8|CAD89757.1|  207|Caenorhabditis elegans Hypothetical pr...    71   4e-13
Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    71   4e-13
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    71   4e-13
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    55   3e-08
Z82059-7|CAD89756.1|  128|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    44   5e-05
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    35   0.043
U80836-10|AAB37890.2|  306|Caenorhabditis elegans Hypothetical p...    33   0.13 
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    30   0.92 
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    30   0.92 
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    30   0.92 
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +AFVR+PKEQG +SFWRGN  NVIRYFPTQA NFAF D Y
Sbjct: 69  DAFVRVPKEQGFVSFWRGNMTNVIRYFPTQAFNFAFNDLY 108


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +  VR+PKEQG  + WRGN ANVIRYFPTQALNFAFKD Y
Sbjct: 73  DVLVRVPKEQGYAALWRGNLANVIRYFPTQALNFAFKDTY 112


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +  VR+PKEQG  + WRGN ANVIRYFPTQALNFAFKD Y
Sbjct: 73  DVLVRVPKEQGYAALWRGNLANVIRYFPTQALNFAFKDTY 112


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +   R+PKEQG  +FWRGN ANV+RYFPTQALNFAFKD Y
Sbjct: 60  DVLARVPKEQGYAAFWRGNLANVLRYFPTQALNFAFKDTY 99


>Z82059-8|CAD89757.1|  207|Caenorhabditis elegans Hypothetical
           protein T27E9.1c protein.
          Length = 207

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +  +R+PKEQG+ + WRGN ANVIRYFPTQA+NFAFKD Y
Sbjct: 60  DVLIRVPKEQGVAALWRGNLANVIRYFPTQAMNFAFKDTY 99


>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +  +R+PKEQG+ + WRGN ANVIRYFPTQA+NFAFKD Y
Sbjct: 60  DVLIRVPKEQGVAALWRGNLANVIRYFPTQAMNFAFKDTY 99


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +  +R+PKEQG+ + WRGN ANVIRYFPTQA+NFAFKD Y
Sbjct: 60  DVLIRVPKEQGVAALWRGNLANVIRYFPTQAMNFAFKDTY 99


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 33/99 (33%), Positives = 57/99 (57%)
 Frame = +2

Query: 233 DPVAFAKDFLGLAGISCLPVSE*HAL*LPI*CCVKLLAPMSPHCTAEQICRVTNCYKWYT 412
           D + F+KDF+  AG +   +S+   +  P+   VKL+  +     ++    + N YK   
Sbjct: 14  DVIKFSKDFM--AGATAAAISK--TVIAPVER-VKLILQLQ---NSQTTLALENRYKGIV 65

Query: 413 SNAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 529
            + F+R+P+EQG LSFWRGN+ N++R    ++L  +FK+
Sbjct: 66  -DCFIRVPREQGFLSFWRGNWVNILRSCSQESLGLSFKE 103


>Z82059-7|CAD89756.1|  128|Caenorhabditis elegans Hypothetical
           protein T27E9.1b protein.
          Length = 128

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 505
           +  +R+PKEQG+ + WRGN ANVIRYFPTQ
Sbjct: 60  DVLIRVPKEQGVAALWRGNLANVIRYFPTQ 89


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +2

Query: 428 RIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           +I  EQG ++ WRGN A V R  P   LNFAF+D Y
Sbjct: 63  KIRLEQGAMALWRGNGAGVARCLPNHTLNFAFRDIY 98


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 EQGLLSFWRGNFANVIRYFPTQALNFAFKDK 532
           E G+ SFWRGN  NVI+  P  A+ F   D+
Sbjct: 294 EGGIKSFWRGNGINVIKIAPESAMKFMCYDQ 324


>U80836-10|AAB37890.2|  306|Caenorhabditis elegans Hypothetical
           protein B0432.4 protein.
          Length = 306

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 416 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 520
           NA  RI KE+G+L+ WRG    V+R     A   A
Sbjct: 152 NALTRITKEEGVLTLWRGCTPTVLRAMVVNAAQLA 186


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 286 QAGDTSQAKKVFGERD-WIGEIRHFVRLCGPLWVDTCGQGRTSAHTEWKNHEKRTPD 119
           ++G  +  KK F +   ++ + +H  R CG +  + C + R S   E K+ +KR  D
Sbjct: 820 ESGHCAYCKKEFNKLSVYVEDRQHHCRNCGRVVCEDCSKNRFSVIEEGKSVQKRACD 876


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 286 QAGDTSQAKKVFGERD-WIGEIRHFVRLCGPLWVDTCGQGRTSAHTEWKNHEKRTPD 119
           ++G  +  KK F +   ++ + +H  R CG +  + C + R S   E K+ +KR  D
Sbjct: 793 ESGHCAYCKKEFNKLSVYVEDRQHHCRNCGRVVCEDCSKNRFSVIEEGKSVQKRACD 849


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 286 QAGDTSQAKKVFGERD-WIGEIRHFVRLCGPLWVDTCGQGRTSAHTEWKNHEKRTPD 119
           ++G  +  KK F +   ++ + +H  R CG +  + C + R S   E K+ +KR  D
Sbjct: 820 ESGHCAYCKKEFNKLSVYVEDRQHHCRNCGRVVCEDCSKNRFSVIEEGKSVQKRACD 876


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 204 VVLFGWILADKEGLRHTRNGKTTKNEPPIFNQEIW 100
           +++FGW+L    G    R GK    E  +F   +W
Sbjct: 139 LMIFGWLLFVPSGFLFARLGKDLFKEQTLFGSAVW 173


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 379 LPSDQLLQVVYVERLRPHSQGAGSALI 459
           +P DQ +Q+V+  R+  H   AGS L+
Sbjct: 150 IPKDQNVQIVFYNRIMNHEVMAGSYLV 176


>AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical
           protein T05H4.9 protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 443 QGLLSFWRGNFANVIRYFPTQALNF 517
           Q L S W G + N+I+ F T  LNF
Sbjct: 404 QPLDSHWNGPWKNLIKKFTTHVLNF 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,728
Number of Sequences: 27780
Number of extensions: 321365
Number of successful extensions: 903
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)