Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D01
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    95   3e-22
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    95   3e-22
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 95.5 bits (227), Expect = 3e-22
 Identities = 63/106 (59%), Positives = 70/106 (66%)
 Frame = +2

Query: 218 MSNLADPVAFAKDFLGLAGISCLPVSE*HAL*LPI*CCVKLLAPMSPHCTAEQICRVTNC 397
           MS LADPVAFAKDFL  AG     +S+      PI   VKLL  +  H + +QI      
Sbjct: 1   MSGLADPVAFAKDFL--AGGVAAAISK--TTVAPIER-VKLLLQVQ-HIS-KQISEEQR- 52

Query: 398 YKWYTSNAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           YK    + FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKY
Sbjct: 53  YKGMI-DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKY 97


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 95.5 bits (227), Expect = 3e-22
 Identities = 63/106 (59%), Positives = 70/106 (66%)
 Frame = +2

Query: 218 MSNLADPVAFAKDFLGLAGISCLPVSE*HAL*LPI*CCVKLLAPMSPHCTAEQICRVTNC 397
           MS LADPVAFAKDFL  AG     +S+      PI   VKLL  +  H + +QI      
Sbjct: 1   MSGLADPVAFAKDFL--AGGVAAAISK--TTVAPIER-VKLLLQVQ-HIS-KQISEEQR- 52

Query: 398 YKWYTSNAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 535
           YK    + FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKY
Sbjct: 53  YKGMI-DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKY 97


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 523 ESEVERLSREVPDDIGEVTTPE 458
           E + ER +RE+PDD+ +   P+
Sbjct: 549 EIKWERANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 523 ESEVERLSREVPDDIGEVTTPE 458
           E + ER +RE+PDD+ +   P+
Sbjct: 549 EIKWERANRELPDDLRQKVLPD 570


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 180 QVSTQRGPHNRTKCRISPIQSRSPKTFLA 266
           Q + Q G ++RTK     +     KTFLA
Sbjct: 56  QAAIQSGEYDRTKNYPLDVDQWHNKTFLA 84


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 85  DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 192
           D  ++P   I+NR  +  G S P   +     K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 404 WYTSNAFVRIPKEQGL 451
           WY+SN  +++P  + L
Sbjct: 813 WYSSNGDIKVPSTKVL 828


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,704
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)