Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C24
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 234 4e-63
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 234 4e-63
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 49 4e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.19
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.3
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 7.1
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 9.4
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 24 9.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 24 9.4
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 234 bits (573), Expect = 4e-63
Identities = 107/142 (75%), Positives = 124/142 (87%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKVA V L AL+ EKKE+PR+
Sbjct: 122 VVKVAGVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 234 bits (573), Expect = 4e-63
Identities = 107/142 (75%), Positives = 124/142 (87%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKVA V L AL+ EKKE+PR+
Sbjct: 122 VVKVAGVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 48.8 bits (111), Expect = 4e-07
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 132 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 311
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 312 AGFGRKGHAVGDIPGVRFKVVK 377
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.19
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 412 SLYRARSDTFATLTTLNLTPGMSPTAWP 329
S Y+ + DT+AT TLN PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -1
Query: 412 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 284
++Y + + +F T ++++ G S L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 261 PRDGCLNHIEENDEVLVAGFGRKGHAVG 344
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 69 WADKEFKKAHMGTRWKANPFGGASHAKGIV 158
W D EF H ++ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 6 RGKPRGIRTARKHVNHRREQRWADKEFKKA 95
R KP A+K VN +R++R A KKA
Sbjct: 393 RAKPGENPLAKKKVNKKRKERAAQWRNKKA 422
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/55 (21%), Positives = 33/55 (60%)
Frame = -1
Query: 388 TFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMS 224
TF++++++ + SP++ L + ++ +S+FSS PS +++++ ++S
Sbjct: 572 TFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILS 626
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,609
Number of Sequences: 5004
Number of extensions: 40647
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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