Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C24
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 242 1e-64
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 242 1e-64
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 148 2e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.57
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.99
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 28 4.0
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.0
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 9.2
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 9.2
06_03_1146 - 28004896-28005554,28005664-28005844 27 9.2
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 9.2
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 9.2
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 9.2
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 9.2
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 242 bits (592), Expect = 1e-64
Identities = 110/142 (77%), Positives = 123/142 (86%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 242 bits (592), Expect = 1e-64
Identities = 110/142 (77%), Positives = 123/142 (86%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 172 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 230
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 231 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 290
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 291 VVKVSGVSLLALFKEKKEKPRS 312
Score = 238 bits (583), Expect = 1e-63
Identities = 108/140 (77%), Positives = 121/140 (86%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 369 VVKVANVSLLALYKEKKERP 428
VVKV+ VSLLAL+KEKKE+P
Sbjct: 121 VVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 148 bits (358), Expect = 2e-36
Identities = 67/102 (65%), Positives = 77/102 (75%)
Frame = +3
Query: 12 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 191
K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 192 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 317
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 297 DEVLVAGFGRKGHAVGDIPGVRFKVVK 377
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.57
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 379 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 248
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 0.99
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 222 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 124
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 8 G*TSGYSHGAQARESSSRAAMGRQGIQKSP 97
G +GY HG + + SSR + R G+ +P
Sbjct: 191 GMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 373 TTLNLTPGMSPTAWPLRPNPATNTSS 296
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 374 NHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHECCHFLAVLNELY 219
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 427 GLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNA- 251
GLS F Y +S +F +L +P + NP + W R+ S + A
Sbjct: 112 GLSNF--YAGKSKSFTSLAEATASPAAAANELAKPENPFNKRRRILATWSRRASCSSLAT 169
Query: 250 VTFLPFLMS 224
T+LP L++
Sbjct: 170 ATYLPPLLA 178
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 358 TPGMSPTAWPLRPNPATNTSSFSS 287
TP SP+ P+ P PA TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 57 REQRWADKEFKKAHMGTRWKANPFGG 134
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 73 PTRNSKKPTWVRDGRRTPSVVHL 141
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 63 QRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 242
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 243 KVTAFVPR 266
K A+V R
Sbjct: 494 KYRAWVDR 501
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 112 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 23
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,010
Number of Sequences: 37544
Number of extensions: 308206
Number of successful extensions: 926
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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