Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C24
(451 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 265 5e-71
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 265 5e-71
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 265 5e-71
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 5e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 54 2e-07
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 54 2e-07
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 54 2e-07
X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein. 30 4.2
DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 4.2
AL162586-6|CAI39765.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 4.2
AL157935-2|CAI12605.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 4.2
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 29 5.5
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 265 bits (649), Expect = 5e-71
Identities = 125/142 (88%), Positives = 133/142 (93%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKVANVSLLALYK KKERPRS
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 265 bits (649), Expect = 5e-71
Identities = 125/142 (88%), Positives = 133/142 (93%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKVANVSLLALYK KKERPRS
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 265 bits (649), Expect = 5e-71
Identities = 125/142 (88%), Positives = 133/142 (93%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 369 VVKVANVSLLALYKEKKERPRS 434
VVKVANVSLLALYK KKERPRS
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 119 bits (286), Expect = 5e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = +3
Query: 255 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 431
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein.
Length = 625
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL162586-6|CAI39765.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL157935-2|CAI12605.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 29.5 bits (63), Expect = 5.5
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 RGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE-KVGVEA 182
R P I R H N A++E KA +H L+ K V
Sbjct: 418 RNFPFYITHIRAHTNLPGPLTKANEEADLLVSSALIKAQELHALTHVNAAGLKNKFDVTW 477
Query: 183 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 326
KQ ++ C + Q++ + PR C N + + D V FGR
Sbjct: 478 KQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHVPSFGR 525
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,423,588
Number of Sequences: 237096
Number of extensions: 1730831
Number of successful extensions: 4121
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4110
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -