Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C21
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   1.4  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   1.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    23   4.2  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    23   5.6  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    22   9.7  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    22   9.7  

>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 29  FDKSK-PKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPA 166
           F  SK P  G++ Q+ ++E +    AVL       + F V C Y PA
Sbjct: 208 FTPSKGPISGNWLQLTYAEPSSAAKAVLSNGMLINDSFMVGCIYSPA 254


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 8   APLKQSDFDKSKPKIGHYTQMAWSES 85
           APL QS +   +P+IG +  +A+  +
Sbjct: 34  APLSQSSWIYRRPRIGRFKSLAYGSA 59


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 5  EAPLKQSDFDKSKPKIGHYT 64
          E PL   +FDK   + GHYT
Sbjct: 26 EWPLLLKNFDKLLVRTGHYT 45


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 110 AKQHIRREWTQTMPSVCNGLF 48
           AK+HI R W ++  S+  G+F
Sbjct: 309 AKKHIARHWDRSPSSIEWGVF 329


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 38  SKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYID 181
           +KP +   T+    E      A   T    W+   V+ +YG    YID
Sbjct: 106 AKPTVESNTEELEEEPPSYEQAAADTAPPYWDTTMVIPDYGSNEIYID 153


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 127 LSILSLQNSTSDVSGL 80
           LS+LSL N  S +SGL
Sbjct: 27  LSVLSLDNMKSTLSGL 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,341
Number of Sequences: 5004
Number of extensions: 14878
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)