Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C20
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 163 6e-42
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 163 6e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 163 6e-42
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 81 6e-17
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 79 2e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 45 4e-06
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 1.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.3
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.1
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 4.1
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 7.1
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 24 9.4
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 9.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 163 bits (397), Expect = 6e-42
Identities = 75/117 (64%), Positives = 95/117 (81%)
Frame = +1
Query: 31 GTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 210
GTGEFEAGISK+GQTREH LLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++I
Sbjct: 119 GTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFI 176
Query: 211 KKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDI 381
KK+G+NP V FVP+SG+ GDNM+EP+T + W++GW E K G + K L+EA+D I
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSI 233
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 163 bits (397), Expect = 6e-42
Identities = 75/117 (64%), Positives = 95/117 (81%)
Frame = +1
Query: 31 GTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 210
GTGEFEAGISK+GQTREH LLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++I
Sbjct: 119 GTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFI 176
Query: 211 KKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDI 381
KK+G+NP V FVP+SG+ GDNM+EP+T + W++GW E K G + K L+EA+D I
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSI 233
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 163 bits (397), Expect = 6e-42
Identities = 75/117 (64%), Positives = 95/117 (81%)
Frame = +1
Query: 31 GTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 210
GTGEFEAGISK+GQTREH LLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++I
Sbjct: 119 GTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFI 176
Query: 211 KKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDI 381
KK+G+NP V FVP+SG+ GDNM+EP+T + W++GW E K G + K L+EA+D I
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSI 233
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 81.0 bits (191), Expect = 6e-17
Identities = 39/101 (38%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Frame = +1
Query: 25 AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
+A GEFEAG + GQTREH +LA T G+ L+V +NKMD +SE R++E ++S
Sbjct: 348 SARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 407
Query: 205 YIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKIAWFKG 315
+++++ GYN V ++P+S + G N+ + S+ W++G
Sbjct: 408 FLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 79.4 bits (187), Expect = 2e-16
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Frame = +1
Query: 43 FEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKI 219
FE G +NGQTREH L LG+ +++V VNK+D +SE RF+EIK VS + IK +
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMV 350
Query: 220 GYNPAAVAFVPISGWHGDNML--EPSTKIAWFKG 315
G+ + V FVPIS G N++ + S W+KG
Sbjct: 351 GFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 45.2 bits (102), Expect = 4e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 70 QTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 207
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 1.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 191 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKSHGSRDGWLSVKKE 340
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 146 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 247
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 148 TEPPYSESRFEEIKKEVSSYIKK 216
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 70 QTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 210
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 149 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 286
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/41 (21%), Positives = 18/41 (43%)
Frame = +1
Query: 142 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 264
DS P + + + + YI+++G P + I+ W
Sbjct: 513 DSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRLLGQIASW 553
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 20 EAPLVLVNSKPVSQRTDKRVNTV 88
E P L NSKPV+ + RV V
Sbjct: 196 ENPYNLSNSKPVNNNNEDRVEAV 218
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 156 WLSGVHFVYSYNQLLDSECE 97
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,575
Number of Sequences: 5004
Number of extensions: 35962
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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