Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C20
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 192 9e-50
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 192 9e-50
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 136 5e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 83 7e-17
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 83 7e-17
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 83 9e-17
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 64 3e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 34 0.030
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 34 0.030
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 34 0.030
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 33 0.069
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 33 0.069
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical pr... 28 2.0
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 27 3.4
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 4.5
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 4.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 4.5
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 6.0
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 27 6.0
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 27 6.0
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 27 6.0
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 192 bits (467), Expect = 9e-50
Identities = 91/120 (75%), Positives = 100/120 (83%)
Frame = +1
Query: 25 AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
A GTGEFEAGISKNGQTREH LLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS
Sbjct: 117 ACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSG 176
Query: 205 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDIL 384
+IKKIGYNP AV FVPISG++GDNMLE S+ + WFKGW VERKEG A K L+EALD I+
Sbjct: 177 FIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSII 236
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 192 bits (467), Expect = 9e-50
Identities = 91/120 (75%), Positives = 100/120 (83%)
Frame = +1
Query: 25 AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
A GTGEFEAGISKNGQTREH LLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS
Sbjct: 117 ACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSG 176
Query: 205 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDIL 384
+IKKIGYNP AV FVPISG++GDNMLE S+ + WFKGW VERKEG A K L+EALD I+
Sbjct: 177 FIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSII 236
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 136 bits (329), Expect = 5e-33
Identities = 62/89 (69%), Positives = 72/89 (80%)
Frame = +1
Query: 118 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 297
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 298 IAWFKGWLVERKEGKAECKCLIEALDDIL 384
+ WFKGW VERKEG A K L+EALD I+
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSII 202
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 83.0 bits (196), Expect = 7e-17
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Frame = +1
Query: 28 AGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 207
A TGEFE G GQT+EH LL +LGV QLIV VNK+D+ + +S+ RF+EIK +S +
Sbjct: 281 ATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVF 338
Query: 208 I-KKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKG 315
+ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 339 LTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWYDG 372
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 83.0 bits (196), Expect = 7e-17
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Frame = +1
Query: 28 AGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 207
A TGEFE G GQT+EH LL +LGV QLIV VNK+D+ + +S+ RF+EIK +S +
Sbjct: 299 ATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVF 356
Query: 208 I-KKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKG 315
+ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 357 LTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWYDG 390
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 82.6 bits (195), Expect = 9e-17
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +1
Query: 25 AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
+A GEFE G + GQTREH +L T GVK L++ VNKMD + E RF+EI+ +++
Sbjct: 219 SARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTP 278
Query: 205 YIKKIGYNPAA-VAFVPISGWHG 270
+++K+G+NP + +VP SG G
Sbjct: 279 FLRKLGFNPKTDITYVPCSGLTG 301
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 64.1 bits (149), Expect = 3e-11
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 25 AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 192
A GTGEFEAGISKNGQTREH LLA TLGVKQL V+ T P S R + I++
Sbjct: 117 ACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
Score = 35.9 bits (79), Expect = 0.010
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 182 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKSHGSRDGWLSVKKERL 346
+S +S +SR+ TI RL LS TE TC P HGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETL 206
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 34.3 bits (75), Expect = 0.030
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 70 QTREHRLLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY 225
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.030
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 70 QTREHRLLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY 225
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.030
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 70 QTREHRLLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY 225
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.069
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 70 QTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 249
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.069
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 70 QTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 249
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 30.7 bits (66), Expect = 0.37
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 70 QTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--NPAAVA 243
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 244 FVPISGWHGDNMLE 285
G+ + ML+
Sbjct: 168 MSLADGYFKEEMLQ 181
>Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical
protein K01C8.3a protein.
Length = 650
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 350 HSAFPSLRSTNHPLNHAILVDGSNMLSPCQPEM 252
H + R T PL+ A+ D LSPC P++
Sbjct: 615 HESLAKKRYTPQPLDLALAPDSDPELSPCSPQI 647
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 137 LFTPTISCLTPSVKASRRCSRVCPFFEIPASNSPVPAA 24
LF PT+SC+ AS S P PA N VP A
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEA 49
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 145 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 261
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 180 LKSRLTVWWLSGVHFVYSYN 121
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 145 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 261
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 258 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 163
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 384 KDVVEGLNKAFTFSLSFFTLNQPSLEPCDFGGRLQHV-ISVPAR 256
K ++E A ++ T N+P L +FGG +HV I P++
Sbjct: 445 KILIESKRSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSK 488
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 214 KIGYNPAAVAFVPISGWHGDNMLEPSTKIAWF 309
K+G F+ +SGW +N+L+P+ I F
Sbjct: 78 KVGRLSVFFGFIFLSGWFMENLLQPTMAINRF 109
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 384 KDVVEGLNKAFTFSLSFFTLNQPSLEPCDFGGRLQHV-ISVPAR 256
K ++E A ++ T N+P L +FGG +HV I P++
Sbjct: 451 KILIESKRSAEKYATEMLTDNEPILSDMEFGGDGKHVYILTPSK 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,594
Number of Sequences: 27780
Number of extensions: 199895
Number of successful extensions: 713
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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