Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C20
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   233   5e-64
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   233   5e-64
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   233   5e-64
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   217   5e-59
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.23 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.5  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  233 bits (570), Expect = 5e-64
 Identities = 110/120 (91%), Positives = 113/120 (94%)
 Frame = +1

Query: 25  AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
           AAGTGEFEAGISKNGQTREH LLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSS
Sbjct: 44  AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSS 103

Query: 205 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDIL 384
           YIKKIGYNPAAVAFVPISGWHGDNMLE S+K+ WFKGW VERKEGK E KCLIEALD IL
Sbjct: 104 YIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAIL 163


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  233 bits (570), Expect = 5e-64
 Identities = 110/120 (91%), Positives = 113/120 (94%)
 Frame = +1

Query: 25  AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
           AAGTGEFEAGISKNGQTREH LLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSS
Sbjct: 60  AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSS 119

Query: 205 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDIL 384
           YIKKIGYNPAAVAFVPISGWHGDNMLE S+K+ WFKGW VERKEGK E KCLIEALD IL
Sbjct: 120 YIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAIL 179


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  233 bits (570), Expect = 5e-64
 Identities = 110/120 (91%), Positives = 113/120 (94%)
 Frame = +1

Query: 25  AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
           AAGTGEFEAGISKNGQTREH LLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSS
Sbjct: 117 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSS 176

Query: 205 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDIL 384
           YIKKIGYNPAAVAFVPISGWHGDNMLE S+K+ WFKGW VERKEGK E KCLIEALD IL
Sbjct: 177 YIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAIL 236


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  217 bits (529), Expect = 5e-59
 Identities = 102/120 (85%), Positives = 108/120 (90%)
 Frame = +1

Query: 25  AAGTGEFEAGISKNGQTREHRLLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 204
           AAG GEFEAGISKNGQTREH LLAFTLGVKQLIVGVNKMD T+PPYSE+RFEEIKKEVSS
Sbjct: 117 AAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSS 176

Query: 205 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKIAWFKGWLVERKEGKAECKCLIEALDDIL 384
           YIKKIGYN A+VAFVPISGWHGDNMLEPS K  W+KGW VERK+G A+ K LIEALD IL
Sbjct: 177 YIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAIL 236


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 236 PSLSYPFLAGTEITCWSRPPKSHGSRDGWLSVKKE 340
           P+L   F  G  + C S  P   G  DG++   KE
Sbjct: 160 PALEEQFATGRVLACISSRPGQCGREDGYILEGKE 194


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = -2

Query: 300 DFGGRLQHVISVPARNGYESDGSRIVTNFLDVGRDFLLDFL---KSRLTVWWLSGVHFVY 130
           DFG  + +   V    G  +D  R+V     +G   +LDF+    S    W+   V  + 
Sbjct: 81  DFGYDISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILDFVPNHSSHEHPWFKKSVQRIK 140

Query: 129 SYNQ 118
            Y++
Sbjct: 141 PYDE 144


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 240 DGSRIVTNFLDVGRDFL 190
           DG R+V  F+DV +D +
Sbjct: 531 DGQRLVYQFVDVPKDII 547



 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 299 SHGSRDGWLSVKKERLNVNALLRPSTTS 382
           S G+ D  L +K  RLN N+ L+PS  S
Sbjct: 259 SGGNEDANLLLKA-RLNPNSSLQPSLAS 285


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 160 YSESRFEEIKKEVSSYIKKIGYNPAAVAFVPI 255
           Y+ S +       ++Y KK+ YN   +  +P+
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 160 YSESRFEEIKKEVS 201
           Y E R+EEI+++ S
Sbjct: 17  YGEDRWEEIRRQAS 30


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 182 KSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCW 283
           K + K+ PTS   V+    +++   + G  + CW
Sbjct: 252 KPQTKTKPTSPYHVSDHKAAITVGVIMGVFLICW 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,323
Number of Sequences: 438
Number of extensions: 2184
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)