Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C19
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 127 8e-31
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 100 1e-22
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 1.2
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 27 1.2
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 1.6
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 3.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 3.7
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 4.9
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 6.5
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 8.6
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 8.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 8.6
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 127 bits (307), Expect = 8e-31
Identities = 58/110 (52%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Frame = +2
Query: 11 IRHEAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAA 190
++ +FG+ L+D+SITH+TFGKEFT+AVE KQ+AQQ+AE+ARFLVE++EQ+++A VI A
Sbjct: 154 VQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQERQANVIRA 213
Query: 191 EGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQL-SKSRNVTYLPQG 337
EG+A+AA +++K+ AG L+++RR+E ++++A L +K VTYLP G
Sbjct: 214 EGEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGAQVTYLPFG 263
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 100 bits (239), Expect = 1e-22
Identities = 46/106 (43%), Positives = 74/106 (69%)
Frame = +2
Query: 11 IRHEAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAA 190
++ A+F ++LDD+S+TH+ F EFT AVE KQ+AQQDA++A F V++A +K+ ++ A
Sbjct: 164 MKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQGFIVRA 223
Query: 191 EGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYL 328
+G+ +AA L+ ++ + G +ELR++E A +IA LSKS N L
Sbjct: 224 QGEGRAAQLIGEAIKNK-PGFIELRKLETAREIANILSKSNNKVML 268
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 146 VEKAEQQKKAAVIAAEGDAQAAVLLA 223
+E+ E+QK AA AAE +AQ A A
Sbjct: 213 IEREEEQKAAAAAAAEEEAQLAAQTA 238
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 155 AEQQKKAAVIAAEGDAQAAVLLAK 226
AE+QK+A ++ +EG QAA+ +A+
Sbjct: 211 AERQKRAEILESEGKRQAAINVAE 234
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 146 VEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAG-EGLVELRRIEAAED 286
+ +E+ + A I+A GD LLAK+ G EG++ ++ D
Sbjct: 169 ITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISD 216
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 162 CSAFSTRNLAFSASCCATCFNSTACVNSLPNVKC 61
C + + + A SA+ N+T C N++ N+KC
Sbjct: 350 CPSRNKTSWAVSANAFPVTPNTTICSNAVKNLKC 383
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 77 KEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAE 193
+E T+ +L + QD++K R LVE+ E +++ A E
Sbjct: 516 EELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGE 554
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 143 LVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAA 280
L+ + ++ + A+V + D + FG G G+ +LRRI A
Sbjct: 532 LLSRTDEVESASVAQIDMDINRTMAKNVFFGGKGPGIPKLRRILVA 577
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 276 LLRTSHTNYPNRETSLTYRKAKTYC*ISPHKTNFLSY 386
+LR H NRE R+ K + PH F+S+
Sbjct: 619 ILRVEHEEIYNRENLRAARELKPLDFVKPHSDVFVSH 655
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 197 DAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQN 343
+A +++L + FGSAG+ +V +E E S LP Q+
Sbjct: 172 EALESIMLNEEFGSAGKNVVIEELLEGEELSILTFSDGYTCRSLPPAQD 220
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 103 QLDGLRELLAECQ-VCDGNVIE 41
QL+GL ELL E Q +C+G E
Sbjct: 885 QLEGLHELLRESQRLCEGRTKE 906
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.6 bits (51), Expect = 8.6
Identities = 18/94 (19%), Positives = 42/94 (44%)
Frame = +2
Query: 8 GIRHEAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIA 187
G++ + + + +D ++TH KE + +EL+ + ++ + K E+ +
Sbjct: 192 GLKRDQETQVKVDQATLTHYRSDKERAEKIELR--VHESLKRISCIRSKVEELDQEITET 249
Query: 188 AEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDI 289
A + L KS + ++ +R +E+ DI
Sbjct: 250 ARLQDE----LFKSTEEYEQQMITIRHLESQSDI 279
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 8.6
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = -3
Query: 82 LLAECQVCDGNVIED 38
++A+C +C GN+++D
Sbjct: 647 IIAKCPMCRGNIVQD 661
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,716
Number of Sequences: 5004
Number of extensions: 34196
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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