Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C19
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0362 - 22366668-22367516 140 4e-34
04_04_0143 - 23091613-23092467 138 2e-33
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 110 5e-25
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 110 5e-25
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 55 3e-08
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 44 5e-05
07_03_1593 + 28001165-28001193,28001214-28001288,28002004-28002796 30 0.93
02_02_0280 - 8515894-8517309 30 0.93
08_02_1149 + 24706429-24708105 28 3.7
01_06_1481 - 37675793-37677325 28 3.7
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 28 5.0
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 28 5.0
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 28 5.0
12_02_0766 - 22982606-22983288,22984352-22984706 27 6.5
12_02_1097 - 26059963-26061093 27 8.7
12_01_0305 + 2304572-2304677,2305414-2305481,2305585-2305716,230... 27 8.7
07_03_0912 + 22544144-22545589 27 8.7
02_05_1207 + 34943940-34944419 27 8.7
>02_04_0362 - 22366668-22367516
Length = 282
Score = 140 bits (340), Expect = 4e-34
Identities = 62/111 (55%), Positives = 95/111 (85%)
Frame = +2
Query: 11 IRHEAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAA 190
IR A+F ++LDD++ITHL +G EF+QAVE KQVAQQ+AE++RFLV +AEQ+++AA++ A
Sbjct: 161 IRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRA 220
Query: 191 EGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQN 343
EG+++AA L++++ +AG GL+ELRRIEAA++IA +L++S NV+Y+P G +
Sbjct: 221 EGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPNVSYIPAGDS 271
>04_04_0143 - 23091613-23092467
Length = 284
Score = 138 bits (335), Expect = 2e-33
Identities = 62/111 (55%), Positives = 93/111 (83%)
Frame = +2
Query: 11 IRHEAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAA 190
IR +F +ILDD++ITHL++G EF+QAVE KQVAQQ+AE+++FLV KAEQ+++AA++ A
Sbjct: 160 IRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKAEQERRAAIVRA 219
Query: 191 EGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQN 343
EG++++A L++++ +AG GL+ELRRIEAA +IA +L++S NV Y+P G N
Sbjct: 220 EGESESARLISEATAAAGTGLIELRRIEAAREIAAELARSPNVAYVPAGDN 270
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 110 bits (265), Expect = 5e-25
Identities = 54/110 (49%), Positives = 82/110 (74%)
Frame = +2
Query: 29 FGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQA 208
F + LDD+SIT L+FGKEFT A+E KQVA Q+AE+A+F+VEKAEQ K++A+I A+G+A++
Sbjct: 243 FNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKS 302
Query: 209 AVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQNVLLNL 358
A L+ ++ + + LR+IEAA +I++ +S S N +L ++LLNL
Sbjct: 303 AELIGQAIAN-NPAFLALRQIEAAREISHTMSSSANKVFL-DSNDLLLNL 350
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 110 bits (265), Expect = 5e-25
Identities = 54/116 (46%), Positives = 84/116 (72%)
Frame = +2
Query: 23 AQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDA 202
+ F + LDD+SIT L+FGKEFT A+E KQVA Q+AE+A+F+VEKAEQ K++A+I A+G+A
Sbjct: 163 SNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEA 222
Query: 203 QAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQNVLLNLPTQN 370
++A L+ ++ + + LR+IEAA +I++ ++ S N YL +++LL L N
Sbjct: 223 KSAQLIGEAINN-NPAFLALRQIEAAREISHTMASSNNKVYL-DSKDLLLGLQQLN 276
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = +2
Query: 68 TFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAE 193
+F KEFT A+E KQV +Q+A++A+F+VEKAEQ K+ AVI +
Sbjct: 429 SFRKEFTHAIETKQVDEQEAQRAKFIVEKAEQHKRKAVITEQ 470
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 23 AQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAE 130
+ F + LDD+SIT L+FGKEFT A+E KQ + A+
Sbjct: 328 SNFNIALDDVSITSLSFGKEFTHAIEAKQGEAKSAQ 363
>07_03_1593 + 28001165-28001193,28001214-28001288,28002004-28002796
Length = 298
Score = 30.3 bits (65), Expect = 0.93
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 110 VAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLA 223
+A DAE+ R L+E+ + + A + AE A+AAV LA
Sbjct: 232 LAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLA 269
>02_02_0280 - 8515894-8517309
Length = 471
Score = 30.3 bits (65), Expect = 0.93
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 LTFGKEFTQAVELKQVAQQDAEK-ARFLVEKAEQQKKAAVIAAEG 196
+T T A + K+V A K A + EKAEQ K+AA AA+G
Sbjct: 285 VTLSTGATVAQKAKEVTADTAHKVAEYAREKAEQGKEAAARAADG 329
>08_02_1149 + 24706429-24708105
Length = 558
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 264 VVSKLLRTSHTNYPNRETSLTYRKAKTYC*ISPHKTNFLSYIY*RFKVIPET 419
V +L R ++ PN T + + YC +PH+ N L + VIPE+
Sbjct: 379 VPEELKRGYYSRMPNSFHQSTTKHSPEYCNEAPHEKNLLKNFGQQNAVIPES 430
>01_06_1481 - 37675793-37677325
Length = 510
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 110 VAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGS-AGEGLVELRR 268
+A++ K R ++E E ++ + +AA G+A AAV K G+ AG LRR
Sbjct: 424 MAEEIEGKIRLVMESEEGERLRSSVAAHGEA-AAVAWRKDGGAGAGSSRAALRR 476
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 95 VELKQVAQQDAEKARFLVEKAEQQ-KKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRI 271
VE + +KAR L K + KKAA +AAE + LAK+ + + ELR
Sbjct: 27 VEAASEISSEKKKARELQRKLDAATKKAAKLAAENSS-----LAKALDAKDAAIGELRES 81
Query: 272 EAAED 286
++A D
Sbjct: 82 KSASD 86
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 131 KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAA 280
K++ +V AEQ+KKA +A G + ++A + + G E+R +E A
Sbjct: 568 KSKSIVVSAEQKKKATPVAGGGGGEIDNMMA-AMAARGPLEFEVRELEEA 616
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 176 AVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRN 316
A A G +A + A S G G +E++RIE + K RN
Sbjct: 108 AAAAPAGSGSSAAVAAGSSEKMGRGKIEIKRIENTTNRQVTFCKRRN 154
>12_02_0766 - 22982606-22983288,22984352-22984706
Length = 345
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +2
Query: 119 QDAEKARFLVEKAEQ---QKKAAVIAAEGDAQAAVLLAKSFGSAG 244
Q E + F V++ E Q+KAA + ++GD + +++L +++ +G
Sbjct: 229 QFREPSNFEVDETESITVQEKAADLTSDGDEKNSIILVRAYPQSG 273
>12_02_1097 - 26059963-26061093
Length = 376
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 173 AAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAE--DIAYQLSKSRNVTYLPQGQ 340
AA +AA+ DA+ + A +FG+ G RR AA ++ + K V LP G+
Sbjct: 219 AAALAADADAEGVRVRAVTFGAPRVGDDAFRRAVAARGVEVFRVIVKQDIVPKLPMGK 276
>12_01_0305 +
2304572-2304677,2305414-2305481,2305585-2305716,
2307813-2307971,2308170-2308547
Length = 280
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 274 FDTTEFH*TFTGAAEGFCQQDSGLSVSLSGYD 179
F+ + +FT A EG ++ GLSVSL+G D
Sbjct: 105 FEILQLTGSFTIAEEGVRRRTGGLSVSLAGPD 136
>07_03_0912 + 22544144-22545589
Length = 481
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 92 AVELKQVAQQDAEKARFLVEKAEQQK 169
AVEL++ +D + AR LVE AE ++
Sbjct: 397 AVELRRTTAKDGDAARSLVEAAEVER 422
>02_05_1207 + 34943940-34944419
Length = 159
Score = 27.1 bits (57), Expect = 8.7
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 98 ELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEA 277
E+++ A + AE V+ AE K+AA +A EG V L AG+GLV+ + A
Sbjct: 86 EVEEAAVEAAEVGGEAVKAAE--KEAAEVAGEG-----VQLVAGAELAGDGLVQAGAVAA 138
Query: 278 AE 283
E
Sbjct: 139 TE 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,287
Number of Sequences: 37544
Number of extensions: 226916
Number of successful extensions: 648
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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