Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C19
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 172 1e-43
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 103 1e-22
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 31 0.48
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 31 0.48
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 30 1.1
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 30 1.1
Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 2.6
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 2.6
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 28 3.4
Z81532-8|CAB04327.2| 248|Caenorhabditis elegans Hypothetical pr... 28 4.5
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 27 5.9
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 5.9
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 172 bits (419), Expect = 1e-43
Identities = 84/112 (75%), Positives = 100/112 (89%)
Frame = +2
Query: 23 AQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDA 202
AQFGL+LDDI+ITHL FG+EFT+AVE+KQVAQQ+AEKAR+LVEKAEQ K AAV AEGDA
Sbjct: 162 AQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAEGDA 221
Query: 203 QAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQNVLLNL 358
QAA LLAK+F SAG+GLVELR+IEAAE+IA +++K++NVTYLP Q LLNL
Sbjct: 222 QAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQQTLLNL 273
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 103 bits (246), Expect = 1e-22
Identities = 52/116 (44%), Positives = 81/116 (69%)
Frame = +2
Query: 11 IRHEAQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAA 190
I F +ILDD+S+T L F +++ AVE KQVA Q+A++A F VE+A+QQK+ ++ A
Sbjct: 168 IERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQQKQEKIVQA 227
Query: 191 EGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLSKSRNVTYLPQGQNVLLNL 358
EG+A++A LL ++ + G ++LR+I AA+ IA +S+S N TYLP G ++LN+
Sbjct: 228 EGEAESAKLLGEAMKN-DPGFLKLRKIRAAQKIARIVSESGNKTYLPTG-GLMLNI 281
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 31.1 bits (67), Expect = 0.48
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -1
Query: 165 CCSAFSTRN--LAFSASCCATCFNSTACVNSLPNVKCVMEMSSRMSPN*ASCR 13
C S R +A + CA FN T C LP CV +PN CR
Sbjct: 177 CAGGCSNRGRCVAPNQCSCADGFNGTRCEQCLPRAGCVNGDCVNETPNTCKCR 229
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 31.1 bits (67), Expect = 0.48
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -1
Query: 165 CCSAFSTRN--LAFSASCCATCFNSTACVNSLPNVKCVMEMSSRMSPN*ASCR 13
C S R +A + CA FN T C LP CV +PN CR
Sbjct: 177 CAGGCSNRGRCVAPNQCSCADGFNGTRCEQCLPRAGCVNGDCVNETPNTCKCR 229
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 QAVELKQVA-QQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAK--SFGSAGEGLVE 259
+ VEL+ V ++A +A + A +IAAEG+ +A+ LA+ + S EG ++
Sbjct: 199 ERVELRDVRLPSQMQRAMAAEAEATRDAGAKIIAAEGELRASAALAEAATIISKSEGAMQ 258
Query: 260 LRRIEAAEDIA 292
LR + I+
Sbjct: 259 LRYLHTLNAIS 269
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 QAVELKQVA-QQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAK--SFGSAGEGLVE 259
+ VEL+ V ++A +A + A +IAAEG+ +A+ LA+ + S EG ++
Sbjct: 199 ERVELRDVRLPSQMQRAMAAEAEATRDAGAKIIAAEGELRASAALAEAATIISKSEGAMQ 258
Query: 260 LRRIEAAEDIA 292
LR + I+
Sbjct: 259 LRYLHTLNAIS 269
>Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical
protein T05C12.5 protein.
Length = 168
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 86 TQAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGS 238
T +V +Q+ ++A+ R L+EK ++ K V + + + +++ KSF S
Sbjct: 27 TSSVAKRQIESKNAQLLRQLIEKKNKKLKKKVYSNAEEQEIDLIIQKSFDS 77
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 125 AEKARFLV-EKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 268
A +A FL E+A Q+++A A DAQA +A GL+EL R
Sbjct: 437 AGEAEFLKWEEARQKREAVAAAPYEDAQAHQFVASPPPHVSSGLIELIR 485
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 125 AEKARFLV-EKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 268
A +A FL E+A Q+++A A DAQA +A GL+EL R
Sbjct: 449 AGEAEFLKWEEARQKREAVAAAPYEDAQAHQFVASPPPHVSSGLIELIR 497
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 104 KQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFG 235
K++AQ+DAEKA L +K EQ + I D A A+ G
Sbjct: 1284 KRIAQEDAEKA--LRQKGEQMSNVSGIPVSSDQNAQSSNAQQTG 1325
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +2
Query: 89 QAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 268
+A + KQ+ +AEKAR EKA +++K A + +A AA + E RR
Sbjct: 1155 RAAKTKQM--DEAEKARLEAEKAAEKEKKAKERKKMEASAAAAPESTNSITAR---EERR 1209
Query: 269 IEAAEDI 289
I+ AE++
Sbjct: 1210 IQQAEEM 1216
>Z81532-8|CAB04327.2| 248|Caenorhabditis elegans Hypothetical
protein F36F2.4 protein.
Length = 248
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 152 KAEQQKKAAVIAAEGDAQAA 211
KA Q +KA ++AAE DAQAA
Sbjct: 105 KAAQTEKAGMVAAEMDAQAA 124
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 QAVELKQVAQQ-DAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLL--AKSFGSAGEGLVE 259
+ VE+K V ++A +A ++ +A VIAAEG+ +A+ L A S + ++
Sbjct: 229 ERVEIKDVRLPIQLQRAMAAEAEATREARAKVIAAEGEQKASRALRDAASVIAQSPAALQ 288
Query: 260 LRRIEAAEDIA 292
LR ++ +A
Sbjct: 289 LRYLQTLNSVA 299
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 89 QAVELKQVAQQDAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEG-----L 253
+A + KQ+ +AEKAR EKA +++K A E + + + S +A E
Sbjct: 1163 RAAKTKQM--DEAEKARLEAEKAAEKEKKAKEREEAKERKKMEVEASAAAAPESSNSITA 1220
Query: 254 VELRRIEAAEDI 289
E RRI+ AE++
Sbjct: 1221 REERRIQQAEEM 1232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,821,156
Number of Sequences: 27780
Number of extensions: 200713
Number of successful extensions: 657
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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