Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C18
         (432 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003581-1|AAO39585.1|  946|Drosophila melanogaster LD17329p pro...    30   1.2  
AE014297-767|AAF54252.3| 1399|Drosophila melanogaster CG31258-PA...    30   1.2  
AF241364-1|AAF98386.1|  507|Drosophila melanogaster cleavage and...    29   3.5  
AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-P...    29   3.5  
BT023501-1|AAY84901.1|  919|Drosophila melanogaster LD27033p pro...    28   6.2  
AY121661-1|AAM51988.1|  650|Drosophila melanogaster RE10344p pro...    28   6.2  
AF145646-1|AAD38621.1|  418|Drosophila melanogaster BcDNA.GH0792...    28   6.2  
AE014296-1769|AAN11939.1|  919|Drosophila melanogaster CG8108-PB...    28   6.2  
AE014296-1768|AAF50193.1|  919|Drosophila melanogaster CG8108-PA...    28   6.2  
AE013599-2329|AAF57964.2|  650|Drosophila melanogaster CG30463-P...    28   6.2  
AE013599-2328|AAF57966.2|  650|Drosophila melanogaster CG30463-P...    28   6.2  

>BT003581-1|AAO39585.1|  946|Drosophila melanogaster LD17329p
           protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 182 SQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVA 9
           S  P     K  +  +   V    PA++ + LS+EP EP  P+Q + T  A R P++A
Sbjct: 175 SSTPCTEKQKEEVAKNTTRVETDKPAEKPMELSQEP-EPENPLQTKVTSPA-RNPILA 230


>AE014297-767|AAF54252.3| 1399|Drosophila melanogaster CG31258-PA
           protein.
          Length = 1399

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 182 SQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVA 9
           S  P     K  +  +   V    PA++ + LS+EP EP  P+Q + T  A R P++A
Sbjct: 175 SSTPCTEKQKEEVAKNTTRVETDKPAEKPMELSQEP-EPENPLQTKVTSPA-RNPILA 230


>AF241364-1|AAF98386.1|  507|Drosophila melanogaster cleavage and
           polyadenylation specificityfactor protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 120 YNPQLMILYS*LHSTTGRTLTPVETTTTIRIILLKNLS*FPIYWPCSRST*SLHFNL*MI 299
           Y P L+ILY  + +  GR     +T   + I L       PI W  +    SL F+   +
Sbjct: 224 YEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVN----SLPFDCLQV 279

Query: 300 YP 305
           YP
Sbjct: 280 YP 281


>AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-PA,
           isoform A protein.
          Length = 1455

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 120 YNPQLMILYS*LHSTTGRTLTPVETTTTIRIILLKNLS*FPIYWPCSRST*SLHFNL*MI 299
           Y P L+ILY  + +  GR     +T   + I L       PI W  +    SL F+   +
Sbjct: 224 YEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVN----SLPFDCLQV 279

Query: 300 YP 305
           YP
Sbjct: 280 YP 281


>BT023501-1|AAY84901.1|  919|Drosophila melanogaster LD27033p
           protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 266 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 132
           RAR R   RE+ +  ++ + +R CRL R      + +    E+H+
Sbjct: 517 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 561


>AY121661-1|AAM51988.1|  650|Drosophila melanogaster RE10344p
           protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 103 IGLFVCHGSRSSQGHQYNESQREMH 29
           + LF CHG + +Q   Y E+ +++H
Sbjct: 585 VTLFGCHGGKGNQFWTYRENTKQLH 609


>AF145646-1|AAD38621.1|  418|Drosophila melanogaster BcDNA.GH07921
           protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 266 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 132
           RAR R   RE+ +  ++ + +R CRL R      + +    E+H+
Sbjct: 16  RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 60


>AE014296-1769|AAN11939.1|  919|Drosophila melanogaster CG8108-PB,
           isoform B protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 266 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 132
           RAR R   RE+ +  ++ + +R CRL R      + +    E+H+
Sbjct: 517 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 561


>AE014296-1768|AAF50193.1|  919|Drosophila melanogaster CG8108-PA,
           isoform A protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 266 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 132
           RAR R   RE+ +  ++ + +R CRL R      + +    E+H+
Sbjct: 517 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 561


>AE013599-2329|AAF57964.2|  650|Drosophila melanogaster CG30463-PB,
           isoform B protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 103 IGLFVCHGSRSSQGHQYNESQREMH 29
           + LF CHG + +Q   Y E+ +++H
Sbjct: 585 VTLFGCHGGKGNQFWTYRENTKQLH 609


>AE013599-2328|AAF57966.2|  650|Drosophila melanogaster CG30463-PA,
           isoform A protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 103 IGLFVCHGSRSSQGHQYNESQREMH 29
           + LF CHG + +Q   Y E+ +++H
Sbjct: 585 VTLFGCHGGKGNQFWTYRENTKQLH 609


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,806
Number of Sequences: 53049
Number of extensions: 323636
Number of successful extensions: 869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)