Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C17
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   3.3  
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    25   4.3  
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    25   4.3  
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    25   4.3  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   7.5  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 236 SCEIFFFFLNNPYS 195
           SC I FF+LNN YS
Sbjct: 627 SCPIMFFYLNNWYS 640


>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSI 92
           R  +TYT H+K  TV +  +VYS+
Sbjct: 68  RDAVTYTEHAKRKTVTSLDVVYSL 91


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSI 92
           R  +TYT H+K  TV +  +VYS+
Sbjct: 68  RDAVTYTEHAKRKTVTSLDVVYSL 91


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSI 92
           R  +TYT H+K  TV +  +VYS+
Sbjct: 68  RDAVTYTEHAKRKTVTSLDVVYSL 91


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 457 FFFSIVSNYIYYLSKDI 407
           F FS+  NY+YY+ + +
Sbjct: 122 FVFSVAKNYMYYMGRPL 138


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 238 PGGDNIYLHFQVDNVHGSSVARFEMVPHYLGINLANC 348
           PG  N +L   ++    ++ A F ++P Y  +  +NC
Sbjct: 270 PGVTNYFLQLYINFSFTATGAGFTLIPTYQEVMASNC 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,581
Number of Sequences: 5004
Number of extensions: 30843
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)