Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C17
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638...    29   2.4  
05_05_0126 + 22574191-22575567                                         29   2.4  
01_06_1266 - 35865046-35866395                                         29   2.4  
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386...    27   9.8  
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975...    27   9.8  

>08_01_0718 -
           6365506-6366047,6381623-6381937,6382857-6383082,
           6383295-6383458,6383498-6383934,6384395-6384669
          Length = 652

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 176 CNWFNSMNTGYLKKKKKSHTSLAAITFTYISKLTT 280
           C W  +  TG  +K+ +  TS   I+   I+KLTT
Sbjct: 128 CTWVTTTTTGTTRKEVRGGTSPVRISKKAITKLTT 162


>05_05_0126 + 22574191-22575567
          Length = 458

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 426 ITCQKTFYLLAYNYIFFSFILVYLVNTIS 340
           +T  + FY++   Y++F+ I+VY + TI+
Sbjct: 373 LTLFRQFYIVVIGYLYFTRIVVYALKTIA 401


>01_06_1266 - 35865046-35866395
          Length = 449

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 426 ITCQKTFYLLAYNYIFFSFILVYLVNTIS 340
           +T  + FY++   Y++F+ I+VY + TI+
Sbjct: 364 LTLFRQFYVVVIGYLYFTRIIVYALKTIT 392


>11_06_0607 +
           25437897-25438046,25438180-25438236,25438522-25438602,
           25438720-25438777,25438888-25438991,25439064-25439115,
           25439232-25439281,25440279-25440443,25440531-25440603,
           25440714-25440846,25441146-25441203,25441411-25441458,
           25441593-25441676,25441803-25441868,25442419-25442502
          Length = 420

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 233 TSLAAITFTYISKLTTFTVRVLPGSKWSP 319
           TS+ A  F Y SK T+ T  V+    W P
Sbjct: 387 TSVGAAKFEYYSKNTSITDAVIGSEHWHP 415


>08_01_0966 +
           9751198-9751530,9752182-9752337,9753145-9753240,
           9753599-9753719,9754027-9754196
          Length = 291

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 YGLFKKKKKISHEPGGDNIYLHFQVDN 279
           Y L  K KK++ E G  ++Y+H  ++N
Sbjct: 222 YALVDKSKKLAREWGITDLYVHVAINN 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,913
Number of Sequences: 37544
Number of extensions: 169609
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)