Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C17
(465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 29 1.2
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z83216-7|CAB05676.2| 320|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z78546-3|CAB01768.2| 361|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z74041-7|CAA98518.2| 335|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical pr... 27 8.8
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 27 8.8
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 27 8.8
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 27 8.8
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 27 8.8
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 328 QDSGGPFRT--WQHSNRERCQLGNVGKCYRR 242
+D GP+ + W+ + RERC++ NV Y R
Sbjct: 165 EDQYGPYSSSVWKRNERERCRVRNVNDGYER 195
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 232 HEPGGDNIYLHFQVDNVHGSSVARFEMVPHYLGINLANCIY*VHQYERKKNV 387
H G ++++ + Q +N H S A E + HY + N + H + +K++
Sbjct: 954 HTDGSEHVHHYHQDENAHQHSTAENEHIHHYHTTSNENAHH-HHSVQNEKDI 1004
>Z83216-7|CAB05676.2| 320|Caenorhabditis elegans Hypothetical
protein C08F11.9 protein.
Length = 320
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 15 GTRVLLTYTLHSKTPTVLNYCIVYSIFIFQPFKIFMQVLSR 137
G + LL ++ T +VLN I+ + F++ P I + LSR
Sbjct: 179 GRKKLLAEMVYFSTFSVLNLLILIASFLYLPITISIHKLSR 219
>Z78546-3|CAB01768.2| 361|Caenorhabditis elegans Hypothetical
protein T21H8.2 protein.
Length = 361
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 429 FITCQK--TFYLLAYNYIFFSFILVYLVN 349
F TC TF++ Y YI FSF + Y +N
Sbjct: 30 FNTCSAAGTFFVFVYIYIRFSFRIYYHIN 58
>Z74041-7|CAA98518.2| 335|Caenorhabditis elegans Hypothetical
protein T03F7.4 protein.
Length = 335
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 460 FFFFSIVSNYIYYLSKDILLISLQLHFFFFHIGVLSKY 347
+F SIV++Y ++ + + + LH FF I ++ Y
Sbjct: 265 YFVLSIVTDYYSQMANNFSFLIMSLHGFFSTIATITIY 302
>Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical
protein F16H6.1 protein.
Length = 555
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 241 GGDNIYLHFQVDNVHGSSVARFEMVPHYLGINLA 342
GG+ I +H +DN +A + P++LGI A
Sbjct: 64 GGNLISVHSVIDNNAYQKLAAVSVTPYWLGIKCA 97
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 387 YIFFSFILVYLVNTIS*IYTKIVGDHFEPGNT 292
++ +L+ L +S Y K++GD PG T
Sbjct: 30 FVMSGDVLISLNRNVSSTYAKLLGDQLPPGTT 61
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 387 YIFFSFILVYLVNTIS*IYTKIVGDHFEPGNT 292
++ +L+ L +S Y K++GD PG T
Sbjct: 30 FVMSGDVLISLNRNVSSTYAKLLGDQLPPGTT 61
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 387 YIFFSFILVYLVNTIS*IYTKIVGDHFEPGNT 292
++ +L+ L +S Y K++GD PG T
Sbjct: 30 FVMSGDVLISLNRNVSSTYAKLLGDQLPPGTT 61
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 387 YIFFSFILVYLVNTIS*IYTKIVGDHFEPGNT 292
++ +L+ L +S Y K++GD PG T
Sbjct: 30 FVMSGDVLISLNRNVSSTYAKLLGDQLPPGTT 61
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 387 YIFFSFILVYLVNTIS*IYTKIVGDHFEPGNT 292
++ +L+ L +S Y K++GD PG T
Sbjct: 30 FVMSGDVLISLNRNVSSTYAKLLGDQLPPGTT 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,541,723
Number of Sequences: 27780
Number of extensions: 169836
Number of successful extensions: 451
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -