Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C17
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   1.2  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   4.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSIFI 98
           R  +TYT H+K  TV    +VY++ I
Sbjct: 68  RDAVTYTEHTKRKTVTAMDVVYALKI 93


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 448 SIVSNYIYYLSKDILLISLQLH 383
           ++V+ Y+ YL  DI+  + +LH
Sbjct: 24  TVVAKYMEYLMPDIMPCADELH 45


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 448 SIVSNYIYYLSKDILLISLQLH 383
           ++V+ Y+ YL  DI+  + +LH
Sbjct: 24  TVVAKYMEYLMPDIMPCADELH 45


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 405 YLLAYNYIFFSFI 367
           YLLA  YI F+F+
Sbjct: 49  YLLALLYILFTFL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,272
Number of Sequences: 438
Number of extensions: 2242
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)