Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C16
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   120   3e-28
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    31   0.20 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   5.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  120 bits (288), Expect = 3e-28
 Identities = 58/118 (49%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
 Frame = +3

Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 426 TAKGLFKILEKYRPETEAVRTERL-XXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLV 596
           TA  +FK+L KYRPET A + +RL                  +P  ++ G N V  L+
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +1

Query: 589 SLFENKKAQLVVIAHDVDPIELVLFLPALCRK 684
           +L E KKA+LV+IA DVDPIELV+FLPALC+K
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKK 172


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 610 AQLVVIAHDVDPIELVLFLPALC 678
           ++ +V+A D +PIE++L LP LC
Sbjct: 48  SEFIVMAADTEPIEILLHLPLLC 70


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 354 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 455
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 367 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 465
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,152
Number of Sequences: 5004
Number of extensions: 47553
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)