Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C16
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   119   2e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   119   2e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    94   8e-20
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948...    29   2.6  
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   2.6  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  119 bits (286), Expect = 2e-27
 Identities = 58/117 (49%), Positives = 75/117 (64%)
 Frame = +3

Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83

Query: 426 TAKGLFKILEKYRPETEAVRTERLXXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLV 596
            A  LFK+L KYRPE +A + ERL                 +P  ++ G N VT L+
Sbjct: 84  LATNLFKMLLKYRPEDKAAKKERL-LKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 592 LFENKKAQLVVIAHDVDPIELVLFLPALCRK 684
           L E  KAQLVVIAHDVDPIELV++LPALCRK
Sbjct: 138 LIEQSKAQLVVIAHDVDPIELVVWLPALCRK 168


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  119 bits (286), Expect = 2e-27
 Identities = 58/117 (49%), Positives = 75/117 (64%)
 Frame = +3

Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67

Query: 426 TAKGLFKILEKYRPETEAVRTERLXXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLV 596
            A  LFK+L KYRPE +A + ERL                 +P  ++ G N VT L+
Sbjct: 68  LATNLFKMLLKYRPEDKAAKKERL-LKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 592 LFENKKAQLVVIAHDVDPIELVLFLPALCRK 684
           L E  KAQLVVIAHDVDPIELV++LPALCRK
Sbjct: 122 LIEQSKAQLVVIAHDVDPIELVVWLPALCRK 152


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 44/82 (53%), Positives = 57/82 (69%)
 Frame = +3

Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK 
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84

Query: 426 TAKGLFKILEKYRPETEAVRTE 491
                 ++L++ + E E    E
Sbjct: 85  LGCQKERLLKRAQAEAEGKTVE 106



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 592 LFENKKAQLVVIAHDVDPIELVLFLPALCRK 684
           L E  KAQLVVIAHDVDPIELV++LPALCRK
Sbjct: 123 LIEQSKAQLVVIAHDVDPIELVVWLPALCRK 153


>11_06_0153 -
           20693663-20693689,20693808-20694096,20694493-20694829,
           20695304-20696516,20700247-20700744
          Length = 787

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 572 NQHCYQACLRTRRHSLWSSLMT*TQSNLCSS 664
           NQH    CL TR  ++  S M  T+S++CSS
Sbjct: 229 NQHQQGKCLVTRSEAIQFSAMKQTKSHICSS 259


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 267 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 434
           N  +GQD +    ++ +V+   Y  I Q+ + +L  RLK  PP    + TQ + K    K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411

Query: 435 GLFKILEK 458
               +L+K
Sbjct: 412 AAKDVLQK 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,277,229
Number of Sequences: 37544
Number of extensions: 341862
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)