Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C16
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 142 2e-34
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 124 4e-29
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 122 2e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 4e-21
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.77
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.77
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.77
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.77
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 142 bits (345), Expect = 2e-34
Identities = 64/117 (54%), Positives = 81/117 (69%)
Frame = +3
Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 426 TAKGLFKILEKYRPETEAVRTERLXXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLV 596
+A+ FK+L+KYRPE+ + RL RPNT+R G NT+T+LV
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLV 148
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +1
Query: 592 LFENKKAQLVVIAHDVDPIELVLFLPALCRK 684
L E ++AQLV+IAHDV+P+E+VL LPALCRK
Sbjct: 147 LVETRRAQLVLIAHDVNPLEIVLHLPALCRK 177
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 124 bits (300), Expect = 4e-29
Identities = 63/117 (53%), Positives = 79/117 (67%)
Frame = +3
Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 426 TAKGLFKILEKYRPETEAVRTERLXXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLV 596
+A+ FK+L+KYRPE+ V RPNT+R G NT+T+LV
Sbjct: 92 SARQAFKLLDKYRPESTEV--------------------TKRPNTVRHGVNTITRLV 128
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +1
Query: 592 LFENKKAQLVVIAHDVDPIELVLFLPALCRK 684
L E ++AQLV+IAHDV+P+E+VL LPALCRK
Sbjct: 127 LVETRRAQLVLIAHDVNPLEIVLHLPALCRK 157
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 122 bits (294), Expect = 2e-28
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = +3
Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 425
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 426 TAKGLFKILEKYRPETEAVRTERL 497
+A+ FK+L+KYRPE+ + RL
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRL 218
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 98.3 bits (234), Expect = 4e-21
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +3
Query: 246 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 419
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.77
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 176 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 355
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 356 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 451
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.77
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 176 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 355
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 356 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 451
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.77
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 176 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 355
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 356 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 451
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.77
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 176 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 355
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 356 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 451
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +1
Query: 610 AQLVVIAHDVDPIELVLFLPALC 678
++++V+A D +P+E++L LP LC
Sbjct: 51 SEIIVMAADAEPLEILLHLPLLC 73
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 301 LVGWMSWPIAKF--FVLFSNRGFTIF 230
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,046
Number of Sequences: 27780
Number of extensions: 272701
Number of successful extensions: 643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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