Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C15
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 91 5e-20
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 9e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 41 9e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.002
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 28 0.53
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 0.93
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 0.93
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.6
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 2.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 2.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.8
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 5.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 91.5 bits (217), Expect = 5e-20
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +2
Query: 155 CYKCNRTGHFAREC-TQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 331
CYKC R GH AR+C T G G +R C+ C GH ARDC +CY C
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKI 143
Query: 332 GHIARECAQSPDEPSCYNCNKTGHIARNC 418
GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 84.2 bits (199), Expect = 8e-18
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = +2
Query: 155 CYKCNRTGHFARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 328
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 329 TGHIARECAQSPDE---PSCYNCNKTGHIARNC 418
GH+ R+C SP+ CY C + GHIAR+C
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 73.3 bits (172), Expect = 1e-14
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Frame = +2
Query: 149 SVCYKCNRTGHFARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDC-----KEEADRC 313
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 314 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEG 427
Y+C GHIAR+C + + +CY C GH AR+C G
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Score = 71.7 bits (168), Expect = 4e-14
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +2
Query: 236 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 415
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 416 CP 421
CP
Sbjct: 73 CP 74
Score = 54.8 bits (126), Expect = 5e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 143 SSSVCYKCNRTGHFARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEAD--RCY 316
S+ CY C GH AR+CT G KC+ C + GH + +C++ +D CY
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-------------VKCYSCGKIGHRSFECQQASDGQLCY 160
Query: 317 RCNGTGHIAREC 352
+CN GHIA C
Sbjct: 161 KCNQPGHIAVNC 172
Score = 50.4 bits (115), Expect = 1e-07
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = +2
Query: 308 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 424
RCY C GH AREC + CYNCN+TGH A C E
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTE 53
Score = 33.5 bits (73), Expect = 0.014
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 371 PSCYNCNKTGHIARNCPEG 427
P CYNC + GH AR C +G
Sbjct: 17 PRCYNCGENGHQARECTKG 35
Score = 30.7 bits (66), Expect = 0.10
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 152 VCYKCNRTGHFARECT 199
+CYKCN+ GH A CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 50.8 bits (116), Expect = 9e-08
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +2
Query: 236 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 397
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 398 GHIARNCPE 424
GH++ C +
Sbjct: 133 GHLSGQCEQ 141
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Frame = +2
Query: 155 CYKCNRTGHFARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 322
C+ C + GH ++C + A+D CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKD-----NVSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 323 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPE 424
+ GH++ +C Q+P P C C+ H+A++C +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 37.9 bits (84), Expect = 7e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +2
Query: 134 SKMSSSVCYKCNRTGHFARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKE----- 298
+K + S+C++C H C++ G + KCF C+ GH + C++
Sbjct: 95 AKDNVSICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGL 146
Query: 299 --EADRCYRCNGTGHIARECAQ 358
+ C C+ H+A++C Q
Sbjct: 147 YPKGGCCKFCSSVHHLAKDCDQ 168
Score = 28.7 bits (61), Expect = 0.40
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 344 RECAQSPDEPSCYNCNKTGHIARNCPE 424
R Q + C+ C + GHI ++CPE
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE 94
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 40.7 bits (91), Expect = 9e-05
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 251 CFKCNRTGHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPE 424
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE 142
Score = 37.1 bits (82), Expect = 0.001
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Frame = +2
Query: 146 SSVCYKCNRTGHFAREC------TQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEAD 307
S VC+ C GH +++C T G + + +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 308 R----CYRCNGTGHIAREC 352
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 239 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 373
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 296 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 421
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +2
Query: 146 SSVCYKCNRTGHFARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDC 292
+ VC C GH +C + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCP-------ERINHTMNIVCRHCGSIGHIARDC 349
Score = 25.0 bits (52), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 377 CYNCNKTGHIARNCPE 424
C NC GH +CPE
Sbjct: 311 CQNCGNVGHRRFDCPE 326
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.53
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 209 VCARDAGFNRQREKCFKCNRTGHFARDCKEEA 304
+C + +RQ KC +C RT + +++C+ +A
Sbjct: 484 LCNKWEEHSRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 0.93
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 149 SVCYKCNRTGHFAREC 196
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 275 HFARDCKEEADRCYRCNGTGHIAREC 352
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 251 CFKCNRTGHFARDCK 295
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 0.93
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 149 SVCYKCNRTGHFAREC 196
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 275 HFARDCKEEADRCYRCNGTGHIAREC 352
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 251 CFKCNRTGHFARDCK 295
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 251 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 376
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 344 RECAQSPDEPS-----CYNCNKTGHIARNCP 421
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 3.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 152 VCYKCNRTGHFAREC 196
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 170 CCTCSIRLNSFSIRCITC 117
C TC R+N SIRC++C
Sbjct: 38 CSTCK-RINKRSIRCLSC 54
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -2
Query: 332 PCHYICSNGQPPPCSRAQSARCGC 261
PC +C G PPC+ C C
Sbjct: 293 PCPLLCHPGPCPPCTATVEKFCLC 316
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 3.8
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = +2
Query: 152 VCYKCNRTGH--FARECTQGGVCARDAGFNRQREKCFKCNRTGH---FARDCKEEADRCY 316
+CYKC+ TG+ R C G CAR F R + F G + D + C
Sbjct: 142 MCYKCHNTGYKDSGRPC---GRCAR--RFGRSYDVQFSRPPPGALVVYPGDPRIPGRVCG 196
Query: 317 RCNGTGHI 340
C G+G +
Sbjct: 197 NCKGSGQL 204
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 230 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 328
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,152
Number of Sequences: 5004
Number of extensions: 26184
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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