Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C14
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...   126   3e-30
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    43   2e-05
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   2.9  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   3.9  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   6.8  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   6.8  

>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score =  126 bits (303), Expect = 3e-30
 Identities = 61/92 (66%), Positives = 70/92 (76%), Gaps = 4/92 (4%)
 Frame = +3

Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
           IK+LHE +GH+VT E   G  YRGKLIEAEDNMNCQM  ++VT RDGRV+ L+ VYIRGS
Sbjct: 5   IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64

Query: 330 KIRFLILPDMLKNAPMFK----RQGNKPTAGR 413
            IRFLI+PDML+NAPMFK    R    PT GR
Sbjct: 65  HIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +3

Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
           ++ L +     V+ E   G +  G +   +  MN  +  V +T +      +E + IRG+
Sbjct: 4   VRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGN 63

Query: 330 KIRFLILPDMLKNAPMFKRQGNKP 401
            IR+ ILPD L    +      KP
Sbjct: 64  NIRYYILPDSLPLDTLLIDDSTKP 87


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +3

Query: 126 FAMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 305
           F  S    I   H+   H ++  T    +         DN+N +++L TVT  D  V+ L
Sbjct: 667 FESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWL 726

Query: 306 ENVYI 320
              Y+
Sbjct: 727 GYTYL 731


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 370 AFFNMSGKIRNLILEPRIYTFSNCAT 293
           A+  +SG+ RNL+++P++  + N  T
Sbjct: 251 AYRTVSGESRNLMVDPKVSPYGNSRT 276


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 308  LQLRNASISIRNSHKRHLTIHIIFSFYKFSPVYFAGICFAGHYMTFR 168
            L+L   S+++ +S  R  T     SF + SPV+   I   G YM  R
Sbjct: 1344 LRLDTNSLTLTSSMPRSFTPSYTPSFLEGSPVFSDEILNRGEYMPHR 1390


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 471 LSRPVSPYQQLGLVILHSYRVLRSV 397
           LSR    Y+ L L++ HSY V+ ++
Sbjct: 34  LSRKREQYEDLALILWHSYGVMTAL 58


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 498 PASCPYAPRLSRPVSPYQQLGLVILHSYRVLRSV 397
           P  CP A + S   S Y  +GL+I +  ++ R V
Sbjct: 15  PPKCPLATKASFIFSVYIIIGLIISYLLQIFRIV 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,622
Number of Sequences: 5004
Number of extensions: 39691
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)