Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C14
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 134 4e-32
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 134 5e-32
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 53 1e-07
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 49 2e-06
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 44 7e-05
01_06_1264 + 35854600-35856849 28 3.9
11_05_0090 + 18979316-18981070 27 9.0
03_02_0627 + 9951391-9951523,9951615-9951684,9951829-9951856,995... 27 9.0
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 134 bits (324), Expect = 4e-32
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = +3
Query: 135 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 314
S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T T +DG+V+QLE+V
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHV 63
Query: 315 YIRGSKIRFLILPDMLKNAPMFKR 386
+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFKR 87
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 134 bits (323), Expect = 5e-32
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = +3
Query: 135 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 314
S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T T +DG+V+QLE+V
Sbjct: 4 SLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHV 63
Query: 315 YIRGSKIRFLILPDMLKNAPMFKR 386
+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 64 FIRGSRVRFMIIPDMLKNAPMFKR 87
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 144 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 320
+P+ +L A+GH + E GE Y G L+ + MN + V T +DG + ++ YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 321 RGSKIRFLILPD 356
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +3
Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
++ L + VT E G V G + + +MN + V +T + L+++ +RG+
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 225
Query: 330 KIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 428
IR+ ILPD L + + + KPTAGR A+
Sbjct: 226 NIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +3
Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
++ L + VT E G G + + +MN + V +T + +++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGN 63
Query: 330 KIRFLILPDMLKNAPMF-----KRQGNKPTAGR 413
IR+ ILPD L + + + KPTAG+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96
>01_06_1264 + 35854600-35856849
Length = 749
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 422 TLTASCGRFVSLSFEHWRVLQHVRQNKEPDFGAPYIHILQLRNASIS 282
+L A G+ VS + + W+V+ R N D AP + + + +ASIS
Sbjct: 372 SLPAGTGQLVSFN-KTWQVMHAARHNPNDDPWAPTMSLKEAISASIS 417
>11_05_0090 + 18979316-18981070
Length = 584
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -2
Query: 359 HVRQNKEPDFGAPYIHILQLRNASISIRNSHKRHLTIHI 243
HVR+++E +F + ++ +A+++ H R LT+H+
Sbjct: 51 HVRRDQEREFFSARDAFVRSAHAALAAAAGHVRRLTMHV 89
>03_02_0627 +
9951391-9951523,9951615-9951684,9951829-9951856,
9952208-9952254,9952366-9952456,9952738-9952915,
9953626-9953713,9953788-9953869,9954195-9954270,
9954429-9954496,9954623-9954692,9955469-9955553,
9955671-9955764,9956289-9956372
Length = 397
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 377 HWRVLQHVRQNKEPDFGAPYIHILQLR 297
HW VL H N+ AP HILQ R
Sbjct: 359 HWLVLCHPTTNEMIKITAPLPHILQTR 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,241
Number of Sequences: 37544
Number of extensions: 236847
Number of successful extensions: 621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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