Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C14
         (519 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p pro...   182   2e-46
AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclea...   182   2e-46
AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA...   182   2e-46
BT001620-1|AAN71375.1|  154|Drosophila melanogaster RE35747p pro...    54   2e-07
AE014134-1871|AAF52938.3|  154|Drosophila melanogaster CG17768-P...    54   2e-07
AE014296-2169|AAF49893.1|  124|Drosophila melanogaster CG10753-P...    42   7e-04
AY071359-1|AAL48981.1|  124|Drosophila melanogaster RE39488p pro...    41   9e-04
AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-P...    34   0.13 
AY075349-1|AAL68208.1| 1457|Drosophila melanogaster GH23785p pro...    29   3.8  
AE014298-1254|AAF46430.2| 1457|Drosophila melanogaster CG10966-P...    29   3.8  
AE014298-1253|ABI30971.1| 1475|Drosophila melanogaster CG10966-P...    29   3.8  
BT022961-1|AAY55377.1|  156|Drosophila melanogaster IP04234p pro...    29   5.0  
AE013599-1179|AAF58747.1|  141|Drosophila melanogaster CG12938-P...    29   5.0  

>AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p
           protein.
          Length = 151

 Score =  182 bits (444), Expect = 2e-46
 Identities = 88/103 (85%), Positives = 93/103 (90%), Gaps = 3/103 (2%)
 Frame = +3

Query: 132 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 311
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT +TVTYRDGR A LEN
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60

Query: 312 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 431
           VYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 61  VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103


>AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclear
           ribonucleoproteinSm D3 protein.
          Length = 151

 Score =  182 bits (444), Expect = 2e-46
 Identities = 88/103 (85%), Positives = 93/103 (90%), Gaps = 3/103 (2%)
 Frame = +3

Query: 132 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 311
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT +TVTYRDGR A LEN
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60

Query: 312 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 431
           VYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 61  VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103


>AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA
           protein.
          Length = 151

 Score =  182 bits (444), Expect = 2e-46
 Identities = 88/103 (85%), Positives = 93/103 (90%), Gaps = 3/103 (2%)
 Frame = +3

Query: 132 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 311
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT +TVTYRDGR A LEN
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLEN 60

Query: 312 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 431
           VYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 61  VYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103


>BT001620-1|AAN71375.1|  154|Drosophila melanogaster RE35747p
           protein.
          Length = 154

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 144 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 320
           +P+ +L  A+ H +  E   GE Y G L+  +  MN  +  V  T +DG R  ++   YI
Sbjct: 2   LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61

Query: 321 RGSKIRFLILPD 356
           RGS I++L +PD
Sbjct: 62  RGSTIKYLRIPD 73


>AE014134-1871|AAF52938.3|  154|Drosophila melanogaster CG17768-PA,
           isoform A protein.
          Length = 154

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 144 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 320
           +P+ +L  A+ H +  E   GE Y G L+  +  MN  +  V  T +DG R  ++   YI
Sbjct: 2   LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61

Query: 321 RGSKIRFLILPD 356
           RGS I++L +PD
Sbjct: 62  RGSTIKYLRIPD 73


>AE014296-2169|AAF49893.1|  124|Drosophila melanogaster CG10753-PA
           protein.
          Length = 124

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +3

Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
           ++ L +     VT E   G    G +   +  MN  +  V +T ++     LE + IRG+
Sbjct: 4   VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63

Query: 330 KIRFLILPDML 362
            IR+ ILPD L
Sbjct: 64  NIRYFILPDSL 74


>AY071359-1|AAL48981.1|  124|Drosophila melanogaster RE39488p
           protein.
          Length = 124

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +3

Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
           ++ L +     VT E   G    G +   +  MN  +  V +T ++     LE + IRG+
Sbjct: 4   VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSIRGN 63

Query: 330 KIRFLILPDML 362
            IR+ ILPD L
Sbjct: 64  NIRYFILPDSL 74


>AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-PA
            protein.
          Length = 3687

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 10/34 (29%), Positives = 25/34 (73%)
 Frame = +3

Query: 114  VNHSFAMSIGVPIKVLHEAEGHVVTCETNTGEVY 215
            +++  A+++ VP++++ E +GH +T +T+ G +Y
Sbjct: 1700 ISNGQALTVSVPLQLVEEFQGHYMTMDTSCGSIY 1733


>AY075349-1|AAL68208.1| 1457|Drosophila melanogaster GH23785p
           protein.
          Length = 1457

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +3

Query: 258 MTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 416
           MT  TVTY DGR A   N     S+    I+PD  +NA   +    KPT+  G
Sbjct: 554 MTGSTVTYADGRTASASN-----SRRPIRIVPDWTENAVQGEHYW-KPTSASG 600


>AE014298-1254|AAF46430.2| 1457|Drosophila melanogaster CG10966-PA,
           isoform A protein.
          Length = 1457

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +3

Query: 258 MTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 416
           MT  TVTY DGR A   N     S+    I+PD  +NA   +    KPT+  G
Sbjct: 554 MTGSTVTYADGRTASASN-----SRRPIRIVPDWTENAVQGEHYW-KPTSASG 600


>AE014298-1253|ABI30971.1| 1475|Drosophila melanogaster CG10966-PB,
           isoform B protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +3

Query: 258 MTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 416
           MT  TVTY DGR A   N     S+    I+PD  +NA   +    KPT+  G
Sbjct: 554 MTGSTVTYADGRTASASN-----SRRPIRIVPDWTENAVQGEHYW-KPTSASG 600


>BT022961-1|AAY55377.1|  156|Drosophila melanogaster IP04234p
           protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +3

Query: 171 EGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLIL 350
           +GH V  + +      G +  A+ +M C++T      R+G     ++  +R   IR + +
Sbjct: 34  QGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGGQHPFDHFMVRNRMIRQIHI 93

Query: 351 PDML 362
           P  L
Sbjct: 94  PSYL 97


>AE013599-1179|AAF58747.1|  141|Drosophila melanogaster CG12938-PA
           protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +3

Query: 171 EGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLIL 350
           +GH V  + +      G +  A+ +M C++T      R+G     ++  +R   IR + +
Sbjct: 24  QGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGGQHPFDHFMVRNRMIRQIHI 83

Query: 351 PDML 362
           P  L
Sbjct: 84  PSYL 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,052,626
Number of Sequences: 53049
Number of extensions: 416961
Number of successful extensions: 1101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)