Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C14
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...   144   3e-35
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...   113   5e-26
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    50   1e-06
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    42   3e-04
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    29   2.6  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    28   4.6  
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score =  144 bits (350), Expect = 3e-35
 Identities = 66/86 (76%), Positives = 75/86 (87%)
 Frame = +3

Query: 135 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 314
           S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+    VT+RDGR  QL+NV
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62

Query: 315 YIRGSKIRFLILPDMLKNAPMFKRQG 392
           +IRG+KIRF+ILPDMLKNAPMFK  G
Sbjct: 63  FIRGNKIRFMILPDMLKNAPMFKNIG 88


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score =  113 bits (273), Expect = 5e-26
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +3

Query: 177 HVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPD 356
           H+VT ET TGEVYRGKL EAEDNMNCQ+    VT+RDGR  QL+NV+IRG+KIRF+ILPD
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPD 62

Query: 357 MLKNAPMFK 383
           MLKNAP FK
Sbjct: 63  MLKNAPXFK 71


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
 Frame = +3

Query: 144 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 320
           +P+ +L  A+ H +  E   GE Y G L   +  MN  +  V  T +DG +  ++   Y+
Sbjct: 3   LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62

Query: 321 RGSKIRFLILP----DMLKNA--PMFKRQGNKPTAGRG 416
           RGS I++L +P    D++K     + ++Q  + + GRG
Sbjct: 63  RGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRG 100


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +3

Query: 150 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 329
           ++ L +     V  E   G    G ++  +  MN  +  V++T ++    +L+ + IRG+
Sbjct: 4   VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63

Query: 330 KIRFLILPDML 362
            IR++ILPD L
Sbjct: 64  NIRYIILPDPL 74


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 174 GHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 275
           G V++ ET  G VY+GKL   + N N  +T+  V
Sbjct: 7   GSVISTETKDGNVYQGKLTTYDTN-NGNLTMANV 39


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 147 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGR-VAQLENVYIR 323
           P   L+   G  V C+   G  Y+G L+  +  MN Q+      Y DG     L  + IR
Sbjct: 9   PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAE-EYIDGNSQGNLGEILIR 67

Query: 324 GSKIRFL 344
            + + ++
Sbjct: 68  CNNVLYV 74


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 213 YRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 314
           +R  LI+  +N++C  TL  + + D ++ ++EN+
Sbjct: 61  FRWNLIKKIENLDCLTTLTHLEFYDNQITKVENL 94


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 147 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVA-QLENVYIR 323
           P + L +  G  V  + N+G  YRG L   +  MN  +   T  Y +G++  +  + +IR
Sbjct: 7   PAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALE-QTEEYSNGQLQNKYGDAFIR 65

Query: 324 GSKIRFL 344
           G+ + ++
Sbjct: 66  GNNVLYI 72


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
 Frame = -2

Query: 392 SLSFEHWRVLQHVRQNKEPDFGAPYIHILQLRNASISIRNSHKRHL---------TIHII 240
           ++  E W  +++++   + D   P  H L   + ++ I N  +R++         + H  
Sbjct: 366 AVRLEQWLQVKNIKMYWKVDGRIPLEHFLHFTSVNLEIWNGSRRNVIDIRNILIESPHFR 425

Query: 239 FSFYKFSPVYFAGI 198
           +  +KFSP+   G+
Sbjct: 426 YGRFKFSPITIRGL 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,050,675
Number of Sequences: 27780
Number of extensions: 225197
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)