Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C13
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual          29   0.29 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   2.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.5  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.7  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   6.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.2  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   8.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.2  

>SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -3

Query: 301 NNIFLHMHIFP-CNRIFILLSV*PLSNLKSR-YFRNLLL 191
           NN   HM++ P CNRIF++ S+  +++ K++  F N+ +
Sbjct: 68  NNTNEHMYLQPICNRIFLMTSIIDIASFKAQVLFLNIFM 106


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 417 PDVATN*NCEIILFLNNFSIFCKHKSCLLILTDTCVSVSIIYFYTCIFSLAIEFL 253
           P  A + N  + L  +NFS + ++ S  L L +   ++S  Y  T    ++ +FL
Sbjct: 199 PSAAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTFFLFISNQFL 253


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 393 CEIILFLNNFSIFCKHKSCLLILTDTCVSVSIIYFYT 283
           C  + ++  FS+     + L+ LT T + + I+YF T
Sbjct: 339 CLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFAT 375


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 384 ILFLNNFSIFCKHKSCLLILTDTCVSVSII--YFYTC 280
           + F+  FS FC       IL  TC+ VSII  YF  C
Sbjct: 517 LYFMFGFSFFC-----FGILVTTCIMVSIITVYFQLC 548


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 258 IRLQGKI-CMCKNILLIQIRMYLLK---LANMIYVYKKY*SCLKTELSHNSNLLPHL 416
           +RLQ K+   C    ++ +++ LL    +  + Y Y  + + L   +S +  LLPHL
Sbjct: 302 LRLQEKLGTSCNLFFVLVLKLALLSSSYIGFVPYTYSDWINVLLGSISEDPELLPHL 358


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 142 MKGTTVAQNTS*YPVSFSKTELIVIFTIMLLSREETGDNVCM 17
           MK TT+  NTS  PV+  +  +    T+    R++ G NV M
Sbjct: 314 MKRTTLVANTSNMPVAAREASIYTGITLAEYYRDQ-GKNVSM 354


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 345 KSC--LLILTDTCVSVSIIYFYTCIFSLAI 262
           +SC  LL ++    S+ +IYF  C+F +++
Sbjct: 666 RSCRVLLFISTALFSIIMIYFVFCVFYISL 695


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 318 YLLKLANMIYVYKKY*SCL 374
           + LK  N IY+Y  Y SCL
Sbjct: 235 FALKTINQIYLYFSYPSCL 253


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 344 LCLQKILKLFKNRIISQ 394
           LCL  ILK F  RIIS+
Sbjct: 125 LCLSAILKFFSFRIISE 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,353
Number of Sequences: 5004
Number of extensions: 42092
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)