Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C13
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    30   1.2  
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984...    28   4.7  
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665...    28   4.7  
07_01_0126 - 947072-948687,949454-949627,950117-951572                 27   6.2  
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96...    27   8.2  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    27   8.2  
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886...    27   8.2  

>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 279  CMCKNILLIQIRMYLLKLAN--MIYVYKKY*SCLKTELSHNSNLLPHL 416
            C C +I  +   + +LK+ N  ++ V+  +  C K E+   S+ LPHL
Sbjct: 1043 CSCTSIRNLNSSLKVLKIKNCPVLKVFPLFEICQKFEIERTSSWLPHL 1090


>06_03_0535 +
           21897912-21898064,21898151-21898246,21898362-21898474,
           21898590-21898656,21898741-21898833,21898968-21899111,
           21899693-21899781,21899910-21900015,21900119-21900206,
           21900304-21900422,21900913-21901247,21901824-21901933,
           21902070-21902179,21902303-21902413,21902870-21903174,
           21903267-21903375
          Length = 715

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 302 Q*YIFTHAYFPLQSNFYFVKCLTIVKFEK*VFQKSIVNALR 180
           Q Y+F + + P+Q  +YF     +V+F K V Q  +   LR
Sbjct: 69  QTYVFWNGHEPVQGQYYFSDRYDLVRFVKLVKQAGLYVNLR 109


>02_02_0088 -
           6655493-6655601,6656057-6656259,6656382-6656594,
           6656683-6656792,6656878-6656981,6657076-6657245,
           6657337-6657501,6657584-6657702,6657853-6657940,
           6658035-6658140,6658235-6658323,6658461-6658604,
           6658715-6658807,6658906-6658972,6659116-6659228,
           6659306-6659401,6659524-6659724
          Length = 729

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 302 Q*YIFTHAYFPLQSNFYFVKCLTIVKFEK*VFQKSIVNALR 180
           Q Y+F + + P+Q  +YF     +V+F K V Q  +   LR
Sbjct: 85  QTYVFWNGHEPVQGQYYFSDRYDLVRFVKLVKQAGLYVHLR 125


>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 390 EIILFLNNFSIFCKHKSCLLILTDTCV 310
           E ++FLN++  FC+    + +L D C+
Sbjct: 142 EFVMFLNSYPRFCRQPYSMHLLLDECL 168


>07_01_0129 -
           959600-959625,960100-961428,961585-961657,962185-962226
          Length = 489

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 414 DVATN*NCEIILFLNNFSIFCKHKSCLLILTDTCV 310
           +VA     E ++FLNN    C+    + +L D C+
Sbjct: 164 EVAIEDTSEFVMFLNNCPRLCRQPYSMHLLLDNCL 198


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   RVYSIQTLSPVSSLDNSIMVNITISSVLENETGYYEV 116
           +V  I  L+P  +L NS +VNI I  ++  E  +Y V
Sbjct: 231 KVSDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYRV 267


>01_06_1525 +
           37988037-37988237,37988315-37988410,37988508-37988620,
           37988739-37988805,37988891-37988983,37989095-37989238,
           37989681-37989769,37989912-37990017,37990224-37990311,
           37990395-37990513,37990786-37990950,37991222-37991406,
           37991568-37991668,37991960-37992069,37992287-37992394,
           37992596-37992706,37992791-37993002,37993087-37993423,
           37993593-37993619,37993767-37993877
          Length = 860

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 296 YIFTHAYFPLQSNFYFVKCLTIVKFEK*VFQKSIVNALR 180
           Y+F + + P Q  +YF +   +V+F K V    +   LR
Sbjct: 87  YVFWNGHEPAQGQYYFEERFDLVRFAKIVKDAGLYMILR 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,761
Number of Sequences: 37544
Number of extensions: 220069
Number of successful extensions: 361
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)