Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C13
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-7|CAA84734.1|  328|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear recep...    27   5.6  

>Z35663-7|CAA84734.1|  328|Caenorhabditis elegans Hypothetical
           protein T04A8.8 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 251 NKNSIARENMHV*KYIIDTDTHVSVKISKHDLCLQ 355
           +++SIA EN  V   I+D ++H +   S+HD+ L+
Sbjct: 142 DESSIAAENFPVTVVILDCESHGNDMKSRHDIFLE 176


>Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical
           protein F54D1.4 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 396 NCEIILFLNNFSIFCKHKSCLLI 328
           NCE+  F  N   +C+ + CLL+
Sbjct: 51  NCEVTKFERNACRYCRFRKCLLV 73


>AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear receptor
           NHR-7 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 396 NCEIILFLNNFSIFCKHKSCLLI 328
           NCE+  F  N   +C+ + CLL+
Sbjct: 51  NCEVTKFERNACRYCRFRKCLLV 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,429
Number of Sequences: 27780
Number of extensions: 231523
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)