Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C12
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 28 0.98
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 5.2
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 5.2
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 6.9
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 6.9
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 6.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 9.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.1
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 9.1
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 0.98
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 229 ASQ*LRPGVPSLLSPGTPVSFAESGLEPSVRVHQPGYLFDGVHYEHVDEILAGS 68
A+Q P P +L PG+ S+ S L PS P + + ILA +
Sbjct: 232 ANQQAMPPYPQMLGPGSISSYTNSNLGPSAGFRPPTFFSSPSPQPYSGPILAST 285
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 274 TAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIER 432
TA E+ +KW + + V +R AAE ++ E L + + IER
Sbjct: 179 TAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQLANILKHSTDLLEARIER 231
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 241 PGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNE 375
P P LT +LNR +S L PQ+ G E+ +Q+ +E
Sbjct: 325 PASSSKPAKPLT--DLNRAFSQRLNLDPQKPGKSQGEISEQEEDE 367
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 447 DGVHLPLDPGSD 412
DG+H+ +DPGSD
Sbjct: 21 DGIHIYIDPGSD 32
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 205 HQVEAIVKQHQIPGGLENPYTTLTAHELNRKWSDVRQLV 321
H I K H++ +ENP + T+ EL W + R L+
Sbjct: 165 HIYTLIFKLHKLL--IENPLPSYTSEELKFNWEERRLLI 201
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 6.9
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 299 GPT*GSWCRSATA----RWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 454
GPT S RS+T R+P S A G + +Q +P RGR +PS P
Sbjct: 201 GPTVASTSRSSTQLSDQRYPLSSNFDHRGEAKG---KGKQPLKNPQERGRISPSSP 253
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.0 bits (52), Expect = 6.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 250 LENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIE 429
+ N T L + R W+D L+ GTL A L+ Q+ +S +++ + + G
Sbjct: 197 ITNRATQLRLYSRRRFWNDCSILITNSLGTLNAYLK--QHVKSYKQREKTRLESNGHVSP 254
Query: 430 RQMD 441
R MD
Sbjct: 255 RDMD 258
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/41 (21%), Positives = 20/41 (48%)
Frame = -1
Query: 518 PASYSMSLRSWSSKEPCRPMPMAVTASICLSIQGPTAFAFS 396
PA S+ +++ + +PC + ++ GP +F+ S
Sbjct: 368 PADSSVKIKNMAFAQPCSSLSAPFVLNVITVADGPCSFSLS 408
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 68 HPASC*KVRRVWQTRDAVSPS 6
HP SC V+ +W + D V PS
Sbjct: 1026 HPKSCSVVKCLWASCDMVLPS 1046
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 393 RGEGKRRRTLDREADGRRHSH 455
R G R R+ADGRR +H
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTH 1563
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 21 ISSLPNAPHLSTTGWMEPAR 80
I + PNAP +S + W E R
Sbjct: 359 IGTAPNAPKISNSNWEEERR 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,363
Number of Sequences: 5004
Number of extensions: 39765
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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