Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C12
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0131 - 15576422-15577021 32 0.25
03_06_0199 + 32310272-32311432 30 0.99
01_06_1010 + 33802947-33803473,33804096-33804273 30 0.99
09_04_0445 - 17677126-17677512,17677608-17678564 30 1.3
11_03_0209 - 11685211-11685341,11685557-11685623,11686608-116866... 29 1.7
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 29 3.0
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 28 4.0
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076... 28 4.0
01_01_1127 + 8930593-8932681,8932812-8933401 28 4.0
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812... 28 5.3
10_08_0520 - 18495118-18498237 28 5.3
01_02_0134 + 11470543-11470608,11471718-11471775,11472025-114722... 28 5.3
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 5.3
12_01_0910 + 8858443-8859414 27 7.0
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 27 7.0
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 7.0
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333... 27 7.0
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 9.2
07_01_0262 + 1957973-1958220,1958272-1958935 27 9.2
05_05_0073 - 22186478-22186538,22187170-22187351 27 9.2
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 27 9.2
01_06_0770 - 31844132-31844749 27 9.2
>02_03_0131 - 15576422-15577021
Length = 199
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 393 RGEGKRRRTLDREADG--RRHSHRHGSAGLFGRPAPQTHRIRSRR 521
RGE R+R+ AD RRHSH H G P+P R + RR
Sbjct: 57 RGERDRKRSRSPSADRSHRRHSHSHSHRGR-SSPSPDAGRHKRRR 100
>03_06_0199 + 32310272-32311432
Length = 386
Score = 30.3 bits (65), Expect = 0.99
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 381 EASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTHR 506
EAS G R + + R + RRH G+A L GR HR
Sbjct: 83 EASPPARGARPQPVHRRREARRHDALRGAAALRGRVRCPCHR 124
>01_06_1010 + 33802947-33803473,33804096-33804273
Length = 234
Score = 30.3 bits (65), Expect = 0.99
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 344 PRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADS 502
P + +++ T+ + +++ PS P RW S P A A +TSSA S
Sbjct: 67 PATMSAAPTSAQKAKAKAKKEVPSAPRVSSRWPSSLPRAVSAGAAGRTSSASS 119
>09_04_0445 - 17677126-17677512,17677608-17678564
Length = 447
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +1
Query: 217 AIVKQHQIPGGLE-NP---YTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLR 384
A+ + +PGG E P Y + TA++ + W + L+P + R + +L
Sbjct: 126 ALAWRDALPGGAELRPGLAYVSETAYDHSNLWHGISALIPFASWHARSGCRARPARWALF 185
Query: 385 RQFAEKANAVGPWIERQMDAVTAIGM 462
E + PW+ +A T +GM
Sbjct: 186 HH-GEVRLGMSPWLTSLAEATTGVGM 210
>11_03_0209 -
11685211-11685341,11685557-11685623,11686608-11686697,
11686872-11686965,11687596-11687668,11687772-11687880,
11690338-11690437,11691345-11691443,11691519-11691589,
11691904-11691955,11691976-11692007
Length = 305
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Frame = +2
Query: 53 NNWLDGTREDLVDMFIVHTIEEIS--------GLMDAHARFK 154
NN+ DGT++D +D+ H I +S GL++ HA F+
Sbjct: 202 NNFADGTKQDAMDLLQGHHISSVSRDMPTPTKGLIENHASFR 243
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = -3
Query: 249 TTRNLVLLHNSFDXXXXXXXXXXXLSASPRVALNRACASISPDISSMVCTMNMSTRSSRV 70
T +L L +N+FD + N+ C I PD+ C++ +S R RV
Sbjct: 617 TLYDLNLSYNNFDGEVPVFGVFANATGISVQGNNKLCGGI-PDLHLPTCSLKISKRRHRV 675
Query: 69 PSSQLLKGAARLANSRCSKSLV 4
P ++ +A + C SL+
Sbjct: 676 PGLAIV--VPLVATTICILSLL 695
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 244 QESGVASQ*LRPGVPSLLSPGTPVSFAESGLEPSVRVHQPGYLFDGVHYEH 92
++ AS+ + P +P L S +P S PSV + P F G+H +H
Sbjct: 492 EDKAAASRDMVPPLPPLPSMKSPSESWLSRALPSVSSNPPATSFLGIHVQH 542
>03_05_1154 +
30803983-30806047,30806152-30806968,30807362-30807655,
30808214-30808451
Length = 1137
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 418 PWIERQMDAVTAIGMGLQGSLEDQ 489
PW + +MDA+ ++ + L+GSL+D+
Sbjct: 566 PWEDVEMDAIHSLQLILRGSLQDE 589
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 319 VPQRDGTLAAELRKQQNNESLR--RQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQL 492
VP D TL + R++Q + + + A A A PW + + +TA+G G L +L
Sbjct: 193 VPVPD-TLLEKARQEQGHVTALDPKSRAAAAGAETPWAQTPVTDLTAVGEGRGTVLSLKL 251
Query: 493 RRLIEYEAGV 522
RL + +GV
Sbjct: 252 DRLSDSVSGV 261
>11_02_0083 -
8116997-8117590,8118342-8118745,8119073-8119671,
8120226-8120266
Length = 545
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 159 LSAKLTGVPGDSKLGTPGRSYCEAT 233
+S KL G+PG S +GT G + AT
Sbjct: 183 VSEKLLGIPGSSHVGTYGHNALHAT 207
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = +1
Query: 280 HELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIG 459
+ L K VP D L ++Q++ +L + PW + + +TA+G
Sbjct: 276 YSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGGTETPWAQTPVTDLTAVG 335
Query: 460 MGLQGSLEDQLRRLIEYEAGV 522
G L +L RL + +G+
Sbjct: 336 EGRGTVLSLKLDRLSDSVSGL 356
>01_02_0134 +
11470543-11470608,11471718-11471775,11472025-11472278,
11472307-11472511,11472907-11473142
Length = 272
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 226 KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRD 333
K+H++P G E P T+ ++ K DV Q+VP+ +
Sbjct: 85 KEHELPKGTEGPSTSAIVLIVSEKELDV-QVVPENE 119
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 138 ASISPDISSMVCTMNMSTRSSRVPSSQLL 52
A S ++ +CT+N T S+VP+ +LL
Sbjct: 491 ALTSEELKDHLCTLNHDTSQSKVPTEELL 519
>12_01_0910 + 8858443-8859414
Length = 323
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 518 PASYSMSLRSWSSKEPCRPMPM--AVTASICLSIQGPTAFAFSA 393
P S S+SLRS ++ +P P+P+ V A+ L + A A SA
Sbjct: 78 PVSPSVSLRSTTTPQPALPLPLLALVAAAALLYLAAFAAAAASA 121
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 378 PEASVRGEGKRRRTLDREADGRRHSHRHGSAG 473
P ++VRG+GKR T ++G R SAG
Sbjct: 270 PASAVRGKGKRAATSTAASEGCSKKSRGNSAG 301
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 418 PWIERQMDAVTAIGMGLQGSLEDQLR 495
PW + +MDA+ ++ + L+G+L D ++
Sbjct: 570 PWNDYEMDAIHSLQLILRGTLNDDIK 595
>01_07_0226 +
42130300-42131430,42131530-42131715,42133244-42133345,
42133425-42133481,42133563-42133658,42133736-42133828,
42133945-42134064,42134155-42134187,42134266-42134316,
42135129-42135191
Length = 643
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 366 EQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTHRIRSRR 521
++ +P G G+ +E+DG+R HR S G RP Q R + ++
Sbjct: 19 QEPDPACGASGSGQDAPADQQESDGKRGQHR--SPGDEARPDRQLKRRKKKK 68
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 232 VASQ*LRPGVPSLLSPGTPVSFAESGLEPSVRVHQPG 122
+A Q PGVP ++ PG A +P V + QPG
Sbjct: 111 MAQQMQPPGVPHVMPPGAVRPPAMYAPQPGVYLQQPG 147
>07_01_0262 + 1957973-1958220,1958272-1958935
Length = 303
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 329 ATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP-SAWVCRALWKT 487
AT W R +SS A G +RRR +P+ + S P +A V R + T
Sbjct: 81 ATRSWLRQASSSSAPVAVGCPTRRRPSPAAAAEKCSLPASPPTTAGVARRTYGT 134
>05_05_0073 - 22186478-22186538,22187170-22187351
Length = 80
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 384 ASVRGEGKRRRTLDREADGRR-HSHRHGSAGLFGRPAPQTHRIRSR 518
A VRG G RR+ D DGRR + R G + P TH +R R
Sbjct: 25 AYVRGVGMRRKEDDEAIDGRRCIAGRLGGS----EPVNVTHSLRGR 66
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 378 PEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTHRIRSR 518
P RG G+R R R + + HG A + P PQ +R R R
Sbjct: 147 PSGRGRGRGRRGRGRGRGFNNEDYDDEHGDAEV---PQPQGYRGRGR 190
>01_06_0770 - 31844132-31844749
Length = 205
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 366 EQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRP 488
EQR P A+ G+ R ++ REA R R G G+P
Sbjct: 47 EQRVPAAATSGQ---RASIKREAADRDEEQRQGGGDAAGQP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,917
Number of Sequences: 37544
Number of extensions: 322761
Number of successful extensions: 1232
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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