Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C12
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 120 6e-28
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 120 6e-28
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 58 3e-09
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 34 0.072
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 34 0.072
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 34 0.072
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 30 0.88
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 29 2.7
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 29 2.7
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 28 4.7
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 6.2
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 27 8.2
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 27 8.2
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 27 8.2
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 120 bits (289), Expect = 6e-28
Identities = 60/135 (44%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +1
Query: 121 IRADGRARSVQGHSRRS*QEYQAIVNLVHQVEAIVKQHQIPGGL-ENPYTTLTAHELNRK 297
+ A + +S G + R E+ +I + H+VE +V H + L NPYT L+A ++ RK
Sbjct: 553 VNAHDQFKSTLGDADR---EFSSINQIEHEVEHLVTSHGLDRELLRNPYTDLSASDIRRK 609
Query: 298 WSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGS 477
W +V+ VP+RD L AEL++QQNNE LR FAEKAN VGPW+ER+++ V AIG+G +G
Sbjct: 610 WGEVQNSVPRRDSQLQAELKRQQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRGR 669
Query: 478 LEDQLRRLIEYEAGV 522
LED +++L + V
Sbjct: 670 LEDAIQQLRSIQRNV 684
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +2
Query: 11 DLLHLEFAKRAAPFNNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEAD 175
D L+L+FAKRAAPFNNWLDG REDL D+ IVH + EI L++AH +FK+TLG+AD
Sbjct: 513 DSLYLDFAKRAAPFNNWLDGAREDLADLVIVHEMREIEELVNAHDQFKSTLGDAD 567
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 120 bits (289), Expect = 6e-28
Identities = 60/135 (44%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +1
Query: 121 IRADGRARSVQGHSRRS*QEYQAIVNLVHQVEAIVKQHQIPGGL-ENPYTTLTAHELNRK 297
+ A + +S G + R E+ +I + H+VE +V H + L NPYT L+A ++ RK
Sbjct: 579 VNAHDQFKSTLGDADR---EFSSINQIEHEVEHLVTSHGLDRELLRNPYTDLSASDIRRK 635
Query: 298 WSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGS 477
W +V+ VP+RD L AEL++QQNNE LR FAEKAN VGPW+ER+++ V AIG+G +G
Sbjct: 636 WGEVQNSVPRRDSQLQAELKRQQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRGR 695
Query: 478 LEDQLRRLIEYEAGV 522
LED +++L + V
Sbjct: 696 LEDAIQQLRSIQRNV 710
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +2
Query: 11 DLLHLEFAKRAAPFNNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEAD 175
D L+L+FAKRAAPFNNWLDG REDL D+ IVH + EI L++AH +FK+TLG+AD
Sbjct: 539 DSLYLDFAKRAAPFNNWLDGAREDLADLVIVHEMREIEELVNAHDQFKSTLGDAD 593
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 58.4 bits (135), Expect = 3e-09
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +1
Query: 256 NPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQ 435
NPYT T L W ++++++ +R+ LA E ++Q+ N+ LRR+FA+ ANA W+
Sbjct: 2125 NPYTWFTMDALEDTWRNLQRIIKEREQELAREHQRQEENDKLRREFAKLANAFHAWLTNT 2184
Query: 436 MDAVTAIGMGLQGSLEDQL 492
+ G G+LE+QL
Sbjct: 2185 RQEMMEAG----GTLEEQL 2199
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +2
Query: 17 LHLEFAKRAAPFNNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEAD 175
L+L FAK+A+ FN+W + EDL D +++EEI L DAH F+ +L A+
Sbjct: 2052 LYLAFAKKASTFNSWFENAEEDLTDPVRCNSLEEIRALRDAHGEFQRSLSSAE 2104
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 11 DLLHLEFAKRAAPFNNWLDGTREDLVDMFIVHTIEEISGLMDAHAR-FKATLGE 169
D L EFAK A F+ WL TR+++++ T+EE ++ A+ KA G+
Sbjct: 2164 DKLRREFAKLANAFHAWLTNTRQEMME--AGGTLEEQLDAVERKAKEIKANKGQ 2215
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 33.9 bits (74), Expect = 0.072
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 226 KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKA 405
KQ+Q P GL H++ W+ + +R + AEL++Q+ E L ++F +KA
Sbjct: 377 KQYQPPQGL-------FMHDIESAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKA 429
Query: 406 NAVGPWI 426
W+
Sbjct: 430 KLRDSWL 436
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 33.9 bits (74), Expect = 0.072
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 226 KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKA 405
KQ+Q P GL H++ W+ + +R + AEL++Q+ E L ++F +KA
Sbjct: 377 KQYQPPQGL-------FMHDIESAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKA 429
Query: 406 NAVGPWI 426
W+
Sbjct: 430 KLRDSWL 436
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 33.9 bits (74), Expect = 0.072
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 226 KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKA 405
KQ+Q P GL H++ W+ + +R + AEL++Q+ E L ++F +KA
Sbjct: 377 KQYQPPQGL-------FMHDIESAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKA 429
Query: 406 NAVGPWI 426
W+
Sbjct: 430 KLRDSWL 436
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 30.3 bits (65), Expect = 0.88
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 184 QAIVNLVHQVEAIVKQHQI--PGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELR 357
Q I N + + I + +I PGG+E ELNR V +LV Q + T AA+L+
Sbjct: 109 QEIENALRFLVEIKQYREILKPGGIEEKSAGKIRDELNRLHDAVYRLVEQSNPTYAAQLK 168
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 335 ARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 454
+ W R +S R+T SR TP S+G TP P
Sbjct: 461 SNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTP 500
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 335 ARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 454
+ W R +S R+T SR TP S+G TP P
Sbjct: 459 SNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTP 498
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +3
Query: 366 EQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTHRIRSR 518
E RE E R + +RR R+ GR + R G R R RSR
Sbjct: 141 ENREKEKQSRDKERRRSRSPRDRRGRATTSRSGRTSSSDRDRHSKRRSRSR 191
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 208 QVEAIV-KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQ 366
QVE I K HQI G L+N LTA + + +L+P L + LR Q
Sbjct: 266 QVEHIWNKYHQIIGYLKNEEDQLTAEHYGQFCRKIYRLLPIEQADLMSWLRPAQ 319
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 124 RADGRARSVQGHSRRS*QEYQAIVNLVHQVEAIVKQHQIPGGLENPYTTLTAHEL 288
RA + R V +R A+ N V I+ +IP G+E P T T L
Sbjct: 554 RASEKDRQVYEENRELESRIAALRNKVEMNRKILATMKIPEGVETPVVTTTQKPL 608
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 375 EPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTHRIRSRR 521
+P S + + +R R ++E D RH R + + + HR R+RR
Sbjct: 29 QPRNSHKTKEERYRDKEKERDHERHHDRERRDDRYRKVDSRDHRDRNRR 77
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 WIERQMDAVT-AIGMGLQGSLEDQLRRL 501
W+ RQ D + IGM +Q S D LRR+
Sbjct: 1275 WLSRQFDELEDEIGMTIQTSRADDLRRM 1302
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 WIERQMDAVT-AIGMGLQGSLEDQLRRL 501
W+ RQ D + IGM +Q S D LRR+
Sbjct: 1275 WLSRQFDELEDEIGMTIQTSRADDLRRM 1302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,148,701
Number of Sequences: 27780
Number of extensions: 245439
Number of successful extensions: 860
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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